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The map label for this gene is yliF [H]

Identifier: 218548353

GI number: 218548353

Start: 1007429

End: 1008757

Strand: Direct

Name: yliF [H]

Synonym: EFER_0975

Alternate gene names: 218548353

Gene position: 1007429-1008757 (Clockwise)

Preceding gene: 218548352

Following gene: 218548355

Centisome position: 21.95

GC content: 38.98

Gene sequence:

>1329_bases
ATGTCCAGAATCAATAAAATCGTACTTATGGTGAGTCTGCTGATTTTTTTGTTAATATCGGCAGTCGCCTGCGGAATCTA
TACCCAAATGGTAAAAGAGCGGGTGTATAGTCTGAAACAGTCCGTTATTGATACTGCGTTCGCCATTGCTAATATTGCTG
AGTATCGGCGCAGTGTGGCAATTGAACTGATTAACACGCTGGATTTAAGTGAACAACAACTTTTAACTGGCTTACGTACG
GCATATGGTGACAGCATGTCACCTTCCTATCTTTATGATGTGGGGCCGTATATGGTTTCTAAAAACCAATGTACGCCTAT
AAAAGAGCTTGATACGAATTATTGTGATGAACTTTTACGGAATATCAACTATTTGCATGTAAGAAATGCCGGATATACAG
TACTTGATGGGAAAACTTTTGTTTATTATCTTTATCCAGTAGAAAATAACCAAAGTTTACTGTTTCTTCTGGGGTTGGAG
CGCTTTTCATTGCTGGCAAAATCACTGGCAATGGATGGTGAAAATCTGATGTTCTCCATGTTTAAAGATGGCAAACCGAT
CCTTGGCGATGACTATAATGCTGCTGATGCTGTATTTACAGTGTCGGAAGCCATGGATCGCTTCACTTATCTCCCATCGG
GTTTATATGTTTTTTCTTATAAACGTTCGGTGTATATCCAGATTTGTGCGTTAATTTTACTTTTTGCTGCTGTTGTTGCC
TTTATATCCTATTCCAGTAGTATTTACCTGGTTCGTCGGGTGATTAATCGTGGCATTGTGGAAAAAGAAGCTATTATTAA
TAATAATTTTGACCGGGTAATGGATGGTGGATTGTTTTTTAATCCGGCAGATGTCAAAAAACTATACAGCATGTACAACT
CGGCGTTTCTCGATGATTTAACCAAAGCGATGGGACGTAAATCATTTGATGAGGATTTAAAACTCTTACCAGACCAAAAA
GGCTATTTGTGTCTGTTTGATGTTGATAAATTCAAAAATATCAATGATACCTTCGGACACTTATTTGGCGATGAAGTGCT
AATGAAAGTAGTTAAAATTCTCAAAGCCCAAATGCCAGCGGAAAAAGGTAAAGTTTATCGCTTTGGTGGTGATGAGTTTG
CCATTATTTATACCGGCGGTACGCTTGAAGAATTACTGGCAATCTTAAGGGAGATTGTCCATTTTCAGGTAGGAAGTATT
AATTTAAGCACCAGTATTGGTGTGGCGCATACTGACGAATGTAATGATCTGCAACGGCTTAAAATGCTGGCAGATGAACG
TCTGTATAAGAGCAAAAAGAACGGCCGGGCGCAGATTACCTGGCAATAA

Upstream 100 bases:

>100_bases
TATTGGCTGTGTACAGGCGCAGGGGTATCTGTATCAGAAACCGTTGCCATTTTCAGCATGGGATATCAGTGGAAAGTTAG
TGAAAGAGTAAAAAAGGTTT

Downstream 100 bases:

>100_bases
TAAAGGAAAACCCGGCGAACAACTCGCCGGGTCAGTGAGATTAAACCCGACTTCCCCACAAATCGTACTCGTCGGCATGT
TCAACTTTCACGCGAACAAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSRINKIVLMVSLLIFLLISAVACGIYTQMVKERVYSLKQSVIDTAFAIANIAEYRRSVAIELINTLDLSEQQLLTGLRT
AYGDSMSPSYLYDVGPYMVSKNQCTPIKELDTNYCDELLRNINYLHVRNAGYTVLDGKTFVYYLYPVENNQSLLFLLGLE
RFSLLAKSLAMDGENLMFSMFKDGKPILGDDYNAADAVFTVSEAMDRFTYLPSGLYVFSYKRSVYIQICALILLFAAVVA
FISYSSSIYLVRRVINRGIVEKEAIINNNFDRVMDGGLFFNPADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKLLPDQK
GYLCLFDVDKFKNINDTFGHLFGDEVLMKVVKILKAQMPAEKGKVYRFGGDEFAIIYTGGTLEELLAILREIVHFQVGSI
NLSTSIGVAHTDECNDLQRLKMLADERLYKSKKNGRAQITWQ

Sequences:

>Translated_442_residues
MSRINKIVLMVSLLIFLLISAVACGIYTQMVKERVYSLKQSVIDTAFAIANIAEYRRSVAIELINTLDLSEQQLLTGLRT
AYGDSMSPSYLYDVGPYMVSKNQCTPIKELDTNYCDELLRNINYLHVRNAGYTVLDGKTFVYYLYPVENNQSLLFLLGLE
RFSLLAKSLAMDGENLMFSMFKDGKPILGDDYNAADAVFTVSEAMDRFTYLPSGLYVFSYKRSVYIQICALILLFAAVVA
FISYSSSIYLVRRVINRGIVEKEAIINNNFDRVMDGGLFFNPADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKLLPDQK
GYLCLFDVDKFKNINDTFGHLFGDEVLMKVVKILKAQMPAEKGKVYRFGGDEFAIIYTGGTLEELLAILREIVHFQVGSI
NLSTSIGVAHTDECNDLQRLKMLADERLYKSKKNGRAQITWQ
>Mature_441_residues
SRINKIVLMVSLLIFLLISAVACGIYTQMVKERVYSLKQSVIDTAFAIANIAEYRRSVAIELINTLDLSEQQLLTGLRTA
YGDSMSPSYLYDVGPYMVSKNQCTPIKELDTNYCDELLRNINYLHVRNAGYTVLDGKTFVYYLYPVENNQSLLFLLGLER
FSLLAKSLAMDGENLMFSMFKDGKPILGDDYNAADAVFTVSEAMDRFTYLPSGLYVFSYKRSVYIQICALILLFAAVVAF
ISYSSSIYLVRRVINRGIVEKEAIINNNFDRVMDGGLFFNPADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKLLPDQKG
YLCLFDVDKFKNINDTFGHLFGDEVLMKVVKILKAQMPAEKGKVYRFGGDEFAIIYTGGTLEELLAILREIVHFQVGSIN
LSTSIGVAHTDECNDLQRLKMLADERLYKSKKNGRAQITWQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787056, Length=442, Percent_Identity=78.2805429864253, Blast_Score=742, Evalue=0.0,
Organism=Escherichia coli, GI1787816, Length=192, Percent_Identity=33.8541666666667, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI145693134, Length=130, Percent_Identity=37.6923076923077, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=30.5389221556886, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081881, Length=163, Percent_Identity=31.9018404907975, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=32.0261437908497, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786584, Length=147, Percent_Identity=34.0136054421769, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787802, Length=155, Percent_Identity=34.1935483870968, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787262, Length=233, Percent_Identity=30.0429184549356, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=29.8245614035088, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 50106; Mature: 49975

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRINKIVLMVSLLIFLLISAVACGIYTQMVKERVYSLKQSVIDTAFAIANIAEYRRSVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IELINTLDLSEQQLLTGLRTAYGDSMSPSYLYDVGPYMVSKNQCTPIKELDTNYCDELLR
HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCEECCCCCCCHHHHCHHHHHHHHH
NINYLHVRNAGYTVLDGKTFVYYLYPVENNQSLLFLLGLERFSLLAKSLAMDGENLMFSM
CCCEEEEECCCEEEECCCEEEEEEEEECCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHH
FKDGKPILGDDYNAADAVFTVSEAMDRFTYLPSGLYVFSYKRSVYIQICALILLFAAVVA
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
FISYSSSIYLVRRVINRGIVEKEAIINNNFDRVMDGGLFFNPADVKKLYSMYNSAFLDDL
HHHCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCEECHHHHHHHHHHHHHHHHHHH
TKAMGRKSFDEDLKLLPDQKGYLCLFDVDKFKNINDTFGHLFGDEVLMKVVKILKAQMPA
HHHHCCCCCCHHHHCCCCCCCCEEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EKGKVYRFGGDEFAIIYTGGTLEELLAILREIVHFQVGSINLSTSIGVAHTDECNDLQRL
CCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
KMLADERLYKSKKNGRAQITWQ
HHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
SRINKIVLMVSLLIFLLISAVACGIYTQMVKERVYSLKQSVIDTAFAIANIAEYRRSVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IELINTLDLSEQQLLTGLRTAYGDSMSPSYLYDVGPYMVSKNQCTPIKELDTNYCDELLR
HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCEECCCCCCCHHHHCHHHHHHHHH
NINYLHVRNAGYTVLDGKTFVYYLYPVENNQSLLFLLGLERFSLLAKSLAMDGENLMFSM
CCCEEEEECCCEEEECCCEEEEEEEEECCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHH
FKDGKPILGDDYNAADAVFTVSEAMDRFTYLPSGLYVFSYKRSVYIQICALILLFAAVVA
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
FISYSSSIYLVRRVINRGIVEKEAIINNNFDRVMDGGLFFNPADVKKLYSMYNSAFLDDL
HHHCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCEECHHHHHHHHHHHHHHHHHHH
TKAMGRKSFDEDLKLLPDQKGYLCLFDVDKFKNINDTFGHLFGDEVLMKVVKILKAQMPA
HHHHCCCCCCHHHHCCCCCCCCEEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EKGKVYRFGGDEFAIIYTGGTLEELLAILREIVHFQVGSINLSTSIGVAHTDECNDLQRL
CCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
KMLADERLYKSKKNGRAQITWQ
HHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]