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The map label for this gene is yfcU [H]

Identifier: 218548208

GI number: 218548208

Start: 843083

End: 845731

Strand: Direct

Name: yfcU [H]

Synonym: EFER_0826

Alternate gene names: 218548208

Gene position: 843083-845731 (Clockwise)

Preceding gene: 218548207

Following gene: 218548209

Centisome position: 18.37

GC content: 52.47

Gene sequence:

>2649_bases
ATGGATACGTGTATGCCTGACCATTCTCTTTTCCGCTTACGGGCGCTTCCTTGGTGCGTTGCCGTGGCCATCTCTGGATG
CCATATCAATGCCTGGGCTGATGAAGATATTCAGTTTGATTCCCGTTTTCTGGAATTAAAAGGCGACACGAAAATCGATT
TAAAACGCTTTTCAAGCCAGGGTTATGTTGAGCCAGGTAAATACAGTTTACAGGTTGAGGTCAATAAACAGCCGTTACCC
GGTGAATATGATATTTACTGGTATGCAACAGAAAATGACGCCAATAAGACTTATGCCTGTCTGTCGCCAGACCTGGCGGC
ACAGCTTGGTTTTAAAGAAGACATTGCGAACAATTTGCAATGGGTTCTCGACGGTAAATGCCTCAAGCCAGGCCAACTTG
ACGGTCTGGAAATGCGCGCTGATTTAAGCCAGTCCGCACTCCTTATCACCTTACCGCAGGCTTATCTTGAATACAGCGAT
GTCGACTGGGACCCTCCCTCGCGCTGGGATGATGGCATCTCAGGTTTAATTGCCGATTACAGCATCAATGCCCAAACCCG
ACATGAAGAAAATAGCGGTGATGACAGCAACGATATCAGCGGCAACGGTACGGTTGGCGTTAACCTCGGGCCGTGGCGCT
TGCGAGCCGACTGGCAGAGCGATTATCAGCATACCCGCAGTAATGATAAAGAGACGGAAGACAGCACCGAAAGAAACTGG
GACTGGAGCCGTTACTATGCCTGGCGCGCGTTACCGAGCCTGAAAGCCAAACTGGCACTCGGTGAAGATTACCTCGATTC
CGATATTTTCGATGGCTTTAACTACATCGGCGGTAGTATCAGTACTGACGATCAAATGCTGCCGCCGAATCTGCGCGGCT
ATGCTCCAGATATTTCCGGCGTGGCCCATACGGCGGCGAAAGTCACCGTTAGCCAGGCCGGGCGTATAATTTATGAAACC
CAGGTGCCAGCCGGGCCATTCCGTATCCAGGATCTTGCCGATTTTAGCTCTGGTACGCTGCATGTGCGCATTGAAGAGGT
GAACGGTCAGGTGCAGGAGTATGACATCAGCACTGCCTCCATGCCGTTCCTGACTCGCCCGGGCCAGGTGCGCTACAAAA
TTATGATGGGGCGACCACAGGAGTGGGGGCACCATGTGCAAGGCGGGTTCTTTTCCGGTGGCGAAGCGTCCTGGGGGATA
GCAAACGGCTGGTCACTGTATGGCGGGGCGCTTGGCGATGAAAATTACCAGTCAGCCGCGCTTGGGATTGGTCGCGATCT
CTCCATTTTCGGTGCGATGGCCTTTGATATCACCCACTCGCATACCCGACTTGACGATTCGACCGCTTACGGAAAAAGCA
CTCTCGACGGTAACTCTTTCAGAGTCAGTTATTCCAAAGACTTTGATGAACTCAACAGCCGCGTCACCTTCGCCGGATAC
CGCTTCTCGGAAGAGAACTATATGACCATGAGTGAGTATCTGGACGCGAATGACAGCGCAATGGTCCGCTCAGGCAATGA
TAAAGAGATGTACACCGCCACCTATAACCAGAACTTTAGAGATGCCGGTGTTTCTGTTTACCTGAACTATACGCGTCACA
CCTACTGGGATCGTGAGGAACAGACCAACTACAACGTAATGCTCTCCCACTATTTCAATATGGGCGGCATTCGTAACATG
AGTATCTCTCTGACCGGTTATCGCTATGAGTATGACAACAGCGCCGATAAAGGTGTCTATATCTCCTTAAGTATGCCGTG
GGGTGATAGCAGTACGGTGAGTTACAACGGTAACTACGGTAGCGGTCCTGACAGCAGCCAGGTGGGGTATTTCAGCCGTA
TAGACGACGCCAGTCATTATCAGATAAACGTTGGCAACAGTGAAAATCACTCCAGCGTGGATGGTTATTACAGCCGTGAC
GGTTCAATGGCCCATGTGGACCTCAGTGCCAACTACCATGAAGGGCAGTACACCTCTGCCGGGTTGTCGCTACAGGGCGG
CGCCACGCTCACAGCTCACGGTGGTGCGTTGCACCGAACTCAAAATATGGGCGGTACGCGATTACTGATTGACGCTGACG
GTGTCGCCGACGTACCGGTCGAAGGGAATGGCGCAGCGGTTTATACCAATATGTTTGGCAAAGCCGTCGTTGCCGACGTC
AATAACTACTACCGTAACCAGGCCACTATTGACCTGACCAGACTGCCAGATGACGCTGAAGCCACGCAGTCTGTAGTGCA
GGCGACACTTACCGAAGGCGCCATTGGCTACCGTCAATTTGCGGTTATCAGTGGGCAAAAGGCGATGGCTGTCCTGCGCA
TGAGTGATGGCAGTTACCCGCCATTTGGTGCGGAAGTGAGAAACGAACACGACCAGCAGGTCGGCCTGGTTGATGATGAC
GGCAACGTCTATCTGGCTGGAGTAAAAGCGGGCGAACACATGTGTGTCTCATGGAATGGCGAACCCCACTGTGAGATCTC
ACTGCCAGACCCGCTACCTGCCGACCTGTTCAATGGCCTGTTACTGCCGTGCAAGCAACAAGGCGCTGTGCTGCCTGCGG
CTCCGGTAGAGATTAAACCGATGATTCAGGAACAAACGCAGCAGGTCACACCTGGCGCGGAACCCATGGCTATTTCAGCA
AACCAATAA

Upstream 100 bases:

>100_bases
CCACCTTCCAGATTACCTATCTCTAAGGTAATTCACCCCCATAGCATCGCGCTATGGGGGATTTTGGAACGAGTTTTTGG
ACTTATTATAATAATCACGG

Downstream 100 bases:

>100_bases
CGTGATTAAGGATTGATCCATGTATACATTGACTCGCTCTGCAAAAAGAGTTGCCCCTGCGCTGGCGCTGCTGGTGGCGG
CCGCCAGTTTTACCACCCAC

Product: outer membrane usher protein yfcU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 882; Mature: 882

Protein sequence:

>882_residues
MDTCMPDHSLFRLRALPWCVAVAISGCHINAWADEDIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYSLQVEVNKQPLP
GEYDIYWYATENDANKTYACLSPDLAAQLGFKEDIANNLQWVLDGKCLKPGQLDGLEMRADLSQSALLITLPQAYLEYSD
VDWDPPSRWDDGISGLIADYSINAQTRHEENSGDDSNDISGNGTVGVNLGPWRLRADWQSDYQHTRSNDKETEDSTERNW
DWSRYYAWRALPSLKAKLALGEDYLDSDIFDGFNYIGGSISTDDQMLPPNLRGYAPDISGVAHTAAKVTVSQAGRIIYET
QVPAGPFRIQDLADFSSGTLHVRIEEVNGQVQEYDISTASMPFLTRPGQVRYKIMMGRPQEWGHHVQGGFFSGGEASWGI
ANGWSLYGGALGDENYQSAALGIGRDLSIFGAMAFDITHSHTRLDDSTAYGKSTLDGNSFRVSYSKDFDELNSRVTFAGY
RFSEENYMTMSEYLDANDSAMVRSGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQTNYNVMLSHYFNMGGIRNM
SISLTGYRYEYDNSADKGVYISLSMPWGDSSTVSYNGNYGSGPDSSQVGYFSRIDDASHYQINVGNSENHSSVDGYYSRD
GSMAHVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVADV
NNYYRNQATIDLTRLPDDAEATQSVVQATLTEGAIGYRQFAVISGQKAMAVLRMSDGSYPPFGAEVRNEHDQQVGLVDDD
GNVYLAGVKAGEHMCVSWNGEPHCEISLPDPLPADLFNGLLLPCKQQGAVLPAAPVEIKPMIQEQTQQVTPGAEPMAISA
NQ

Sequences:

>Translated_882_residues
MDTCMPDHSLFRLRALPWCVAVAISGCHINAWADEDIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYSLQVEVNKQPLP
GEYDIYWYATENDANKTYACLSPDLAAQLGFKEDIANNLQWVLDGKCLKPGQLDGLEMRADLSQSALLITLPQAYLEYSD
VDWDPPSRWDDGISGLIADYSINAQTRHEENSGDDSNDISGNGTVGVNLGPWRLRADWQSDYQHTRSNDKETEDSTERNW
DWSRYYAWRALPSLKAKLALGEDYLDSDIFDGFNYIGGSISTDDQMLPPNLRGYAPDISGVAHTAAKVTVSQAGRIIYET
QVPAGPFRIQDLADFSSGTLHVRIEEVNGQVQEYDISTASMPFLTRPGQVRYKIMMGRPQEWGHHVQGGFFSGGEASWGI
ANGWSLYGGALGDENYQSAALGIGRDLSIFGAMAFDITHSHTRLDDSTAYGKSTLDGNSFRVSYSKDFDELNSRVTFAGY
RFSEENYMTMSEYLDANDSAMVRSGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQTNYNVMLSHYFNMGGIRNM
SISLTGYRYEYDNSADKGVYISLSMPWGDSSTVSYNGNYGSGPDSSQVGYFSRIDDASHYQINVGNSENHSSVDGYYSRD
GSMAHVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVADV
NNYYRNQATIDLTRLPDDAEATQSVVQATLTEGAIGYRQFAVISGQKAMAVLRMSDGSYPPFGAEVRNEHDQQVGLVDDD
GNVYLAGVKAGEHMCVSWNGEPHCEISLPDPLPADLFNGLLLPCKQQGAVLPAAPVEIKPMIQEQTQQVTPGAEPMAISA
NQ
>Mature_882_residues
MDTCMPDHSLFRLRALPWCVAVAISGCHINAWADEDIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYSLQVEVNKQPLP
GEYDIYWYATENDANKTYACLSPDLAAQLGFKEDIANNLQWVLDGKCLKPGQLDGLEMRADLSQSALLITLPQAYLEYSD
VDWDPPSRWDDGISGLIADYSINAQTRHEENSGDDSNDISGNGTVGVNLGPWRLRADWQSDYQHTRSNDKETEDSTERNW
DWSRYYAWRALPSLKAKLALGEDYLDSDIFDGFNYIGGSISTDDQMLPPNLRGYAPDISGVAHTAAKVTVSQAGRIIYET
QVPAGPFRIQDLADFSSGTLHVRIEEVNGQVQEYDISTASMPFLTRPGQVRYKIMMGRPQEWGHHVQGGFFSGGEASWGI
ANGWSLYGGALGDENYQSAALGIGRDLSIFGAMAFDITHSHTRLDDSTAYGKSTLDGNSFRVSYSKDFDELNSRVTFAGY
RFSEENYMTMSEYLDANDSAMVRSGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQTNYNVMLSHYFNMGGIRNM
SISLTGYRYEYDNSADKGVYISLSMPWGDSSTVSYNGNYGSGPDSSQVGYFSRIDDASHYQINVGNSENHSSVDGYYSRD
GSMAHVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVADV
NNYYRNQATIDLTRLPDDAEATQSVVQATLTEGAIGYRQFAVISGQKAMAVLRMSDGSYPPFGAEVRNEHDQQVGLVDDD
GNVYLAGVKAGEHMCVSWNGEPHCEISLPDPLPADLFNGLLLPCKQQGAVLPAAPVEIKPMIQEQTQQVTPGAEPMAISA
NQ

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=818, Percent_Identity=34.718826405868, Blast_Score=480, Evalue=1e-136,
Organism=Escherichia coli, GI1786332, Length=876, Percent_Identity=28.9954337899543, Blast_Score=273, Evalue=4e-74,
Organism=Escherichia coli, GI1787172, Length=871, Percent_Identity=27.4397244546498, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1790772, Length=881, Percent_Identity=25.539160045403, Blast_Score=270, Evalue=4e-73,
Organism=Escherichia coli, GI1789533, Length=856, Percent_Identity=27.9205607476636, Blast_Score=268, Evalue=1e-72,
Organism=Escherichia coli, GI1786744, Length=864, Percent_Identity=26.2731481481481, Blast_Score=248, Evalue=9e-67,
Organism=Escherichia coli, GI1788427, Length=828, Percent_Identity=25.8454106280193, Blast_Score=220, Evalue=3e-58,
Organism=Escherichia coli, GI1789610, Length=821, Percent_Identity=22.1680876979294, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 97309; Mature: 97309

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00133 CARBOXYPEPT_ZN_2 ; PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTCMPDHSLFRLRALPWCVAVAISGCHINAWADEDIQFDSRFLELKGDTKIDLKRFSSQ
CCCCCCCHHHHHHHHHHHEEEEEECCEEEEECCCCCCEECCEEEEECCCCEEEHEECCCC
GYVEPGKYSLQVEVNKQPLPGEYDIYWYATENDANKTYACLSPDLAAQLGFKEDIANNLQ
CCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEECCCHHHHCCCHHHHHCCCE
WVLDGKCLKPGQLDGLEMRADLSQSALLITLPQAYLEYSDVDWDPPSRWDDGISGLIADY
EEECCCCCCCCCCCCEEEECCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEEEEE
SINAQTRHEENSGDDSNDISGNGTVGVNLGPWRLRADWQSDYQHTRSNDKETEDSTERNW
ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHCCCCCCCCCCCCCCC
DWSRYYAWRALPSLKAKLALGEDYLDSDIFDGFNYIGGSISTDDQMLPPNLRGYAPDISG
CHHHEEEECCCCCHHEEEEECCHHHCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
VAHTAAKVTVSQAGRIIYETQVPAGPFRIQDLADFSSGTLHVRIEEVNGQVQEYDISTAS
HHHHHHEEEEECCCEEEEEECCCCCCEEEHHHHCCCCCEEEEEEEECCCCEEEEECCCCC
MPFLTRPGQVRYKIMMGRPQEWGHHVQGGFFSGGEASWGIANGWSLYGGALGDENYQSAA
CCEEECCCCEEEEEEECCCHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCHHH
LGIGRDLSIFGAMAFDITHSHTRLDDSTAYGKSTLDGNSFRVSYSKDFDELNSRVTFAGY
HCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCEEEEEEE
RFSEENYMTMSEYLDANDSAMVRSGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREE
EECCCCCEEHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCEECCCCC
QTNYNVMLSHYFNMGGIRNMSISLTGYRYEYDNSADKGVYISLSMPWGDSSTVSYNGNYG
CCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCC
SGPDSSQVGYFSRIDDASHYQINVGNSENHSSVDGYYSRDGSMAHVDLSANYHEGQYTSA
CCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEC
GLSLQGGATLTAHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVADV
CEEECCCEEEEECCCEEEEECCCCCEEEEEECCCCEECCCCCCCCEEEEECCCCEEEEHH
NNYYRNQATIDLTRLPDDAEATQSVVQATLTEGAIGYRQFAVISGQKAMAVLRMSDGSYP
HHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCC
PFGAEVRNEHDQQVGLVDDDGNVYLAGVKAGEHMCVSWNGEPHCEISLPDPLPADLFNGL
CCCHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEECCCCCCHHHHCCC
LLPCKQQGAVLPAAPVEIKPMIQEQTQQVTPGAEPMAISANQ
EEECCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCEEEECCC
>Mature Secondary Structure
MDTCMPDHSLFRLRALPWCVAVAISGCHINAWADEDIQFDSRFLELKGDTKIDLKRFSSQ
CCCCCCCHHHHHHHHHHHEEEEEECCEEEEECCCCCCEECCEEEEECCCCEEEHEECCCC
GYVEPGKYSLQVEVNKQPLPGEYDIYWYATENDANKTYACLSPDLAAQLGFKEDIANNLQ
CCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEECCCHHHHCCCHHHHHCCCE
WVLDGKCLKPGQLDGLEMRADLSQSALLITLPQAYLEYSDVDWDPPSRWDDGISGLIADY
EEECCCCCCCCCCCCEEEECCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEEEEE
SINAQTRHEENSGDDSNDISGNGTVGVNLGPWRLRADWQSDYQHTRSNDKETEDSTERNW
ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHCCCCCCCCCCCCCCC
DWSRYYAWRALPSLKAKLALGEDYLDSDIFDGFNYIGGSISTDDQMLPPNLRGYAPDISG
CHHHEEEECCCCCHHEEEEECCHHHCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
VAHTAAKVTVSQAGRIIYETQVPAGPFRIQDLADFSSGTLHVRIEEVNGQVQEYDISTAS
HHHHHHEEEEECCCEEEEEECCCCCCEEEHHHHCCCCCEEEEEEEECCCCEEEEECCCCC
MPFLTRPGQVRYKIMMGRPQEWGHHVQGGFFSGGEASWGIANGWSLYGGALGDENYQSAA
CCEEECCCCEEEEEEECCCHHHCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCHHH
LGIGRDLSIFGAMAFDITHSHTRLDDSTAYGKSTLDGNSFRVSYSKDFDELNSRVTFAGY
HCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCEEEEEEE
RFSEENYMTMSEYLDANDSAMVRSGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREE
EECCCCCEEHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCEECCCCC
QTNYNVMLSHYFNMGGIRNMSISLTGYRYEYDNSADKGVYISLSMPWGDSSTVSYNGNYG
CCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCC
SGPDSSQVGYFSRIDDASHYQINVGNSENHSSVDGYYSRDGSMAHVDLSANYHEGQYTSA
CCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEC
GLSLQGGATLTAHGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVADV
CEEECCCEEEEECCCEEEEECCCCCEEEEEECCCCEECCCCCCCCEEEEECCCCEEEEHH
NNYYRNQATIDLTRLPDDAEATQSVVQATLTEGAIGYRQFAVISGQKAMAVLRMSDGSYP
HHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCC
PFGAEVRNEHDQQVGLVDDDGNVYLAGVKAGEHMCVSWNGEPHCEISLPDPLPADLFNGL
CCCHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEECCCCCCHHHHCCC
LLPCKQQGAVLPAAPVEIKPMIQEQTQQVTPGAEPMAISANQ
EEECCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]