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The map label for this gene is yfcS [H]

Identifier: 218548209

GI number: 218548209

Start: 845751

End: 846503

Strand: Direct

Name: yfcS [H]

Synonym: EFER_0827

Alternate gene names: 218548209

Gene position: 845751-846503 (Clockwise)

Preceding gene: 218548208

Following gene: 218548210

Centisome position: 18.43

GC content: 53.12

Gene sequence:

>753_bases
ATGTATACATTGACTCGCTCTGCAAAAAGAGTTGCCCCTGCGCTGGCGCTGCTGGTGGCGGCCGCCAGTTTTACCACCCA
CGCATCGGTGACACCCGACCGTACACGCCTGGTCTTCAATGAAGGCGACAAATCTATCAGCGTCACGTTGCGCAATAACG
ACCCGAAGCAGCCCTACCTGGCGCAAAGCTGGATGGAGGACGAAAAGGGCAACAAAATCAGCTCGCCACTTACGGTACTG
CCGCCGGTACAGCGTATTGATGCGATGATGAATGGTCAGGTAAAAGTCCAGGGAATGCCGGATATCAACAAGTTACCGGC
CGATCGTGAGAGCATGTTCTACTTTAACGTGCGTGAAATCCCGCCAAAATCGAACAAACCTAATACGCTGCAAATTGCCC
TGCAAACGCGTATCAAATTGTTCTGGCGACCCAAGGCACTGGCAAAAATTGACATGAGGGAGCCGTGGCAGCACAAGGTG
ACGTTAACCCGCAATGGACAGGCGTTCACCGTCAATAACCCCACGCCCTATTACGTGATTATCAGCAATGCCAGCACACA
GAAAAATGGTAATCCGGCAGCCGGGTTTACGCCGCTGGTCATGCCGCCGAAATCGTCCGCACCGTTGAATGTGAAGATGG
ACACTGTGCCGGTGCTGACTTACGTCAACGACTACGGCGCGCGATTGTCGCTGAACTTTAAATGCAATGGCAATAATTGC
CAGGTGGATGCAGAGCAAAGCCGCAAAGGCTGA

Upstream 100 bases:

>100_bases
GAGATTAAACCGATGATTCAGGAACAAACGCAGCAGGTCACACCTGGCGCGGAACCCATGGCTATTTCAGCAAACCAATA
ACGTGATTAAGGATTGATCC

Downstream 100 bases:

>100_bases
TGCCGGGAGAGTCTTATGAAATACACGTTTCTGGTGGGAACGGGCATTTTTCTCCTGAGCGGCTGGCTGATGGGGAGCCT
TGCCGTGGCAGGGGAAAGTA

Product: periplasmic pilus chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MYTLTRSAKRVAPALALLVAAASFTTHASVTPDRTRLVFNEGDKSISVTLRNNDPKQPYLAQSWMEDEKGNKISSPLTVL
PPVQRIDAMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALAKIDMREPWQHKV
TLTRNGQAFTVNNPTPYYVIISNASTQKNGNPAAGFTPLVMPPKSSAPLNVKMDTVPVLTYVNDYGARLSLNFKCNGNNC
QVDAEQSRKG

Sequences:

>Translated_250_residues
MYTLTRSAKRVAPALALLVAAASFTTHASVTPDRTRLVFNEGDKSISVTLRNNDPKQPYLAQSWMEDEKGNKISSPLTVL
PPVQRIDAMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALAKIDMREPWQHKV
TLTRNGQAFTVNNPTPYYVIISNASTQKNGNPAAGFTPLVMPPKSSAPLNVKMDTVPVLTYVNDYGARLSLNFKCNGNNC
QVDAEQSRKG
>Mature_250_residues
MYTLTRSAKRVAPALALLVAAASFTTHASVTPDRTRLVFNEGDKSISVTLRNNDPKQPYLAQSWMEDEKGNKISSPLTVL
PPVQRIDAMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALAKIDMREPWQHKV
TLTRNGQAFTVNNPTPYYVIISNASTQKNGNPAAGFTPLVMPPKSSAPLNVKMDTVPVLTYVNDYGARLSLNFKCNGNNC
QVDAEQSRKG

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=250, Percent_Identity=83.2, Blast_Score=416, Evalue=1e-118,
Organism=Escherichia coli, GI1786936, Length=240, Percent_Identity=38.3333333333333, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=37.4449339207048, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1788428, Length=225, Percent_Identity=32.4444444444444, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786333, Length=240, Percent_Identity=32.0833333333333, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1790771, Length=222, Percent_Identity=32.8828828828829, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787171, Length=174, Percent_Identity=35.632183908046, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1789532, Length=165, Percent_Identity=30.9090909090909, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786743, Length=221, Percent_Identity=31.2217194570136, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI87081806, Length=238, Percent_Identity=27.3109243697479, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27846; Mature: 27846

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTLTRSAKRVAPALALLVAAASFTTHASVTPDRTRLVFNEGDKSISVTLRNNDPKQPYL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHH
AQSWMEDEKGNKISSPLTVLPPVQRIDAMMNGQVKVQGMPDINKLPADRESMFYFNVREI
HHHHHCCCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PPKSNKPNTLQIALQTRIKLFWRPKALAKIDMREPWQHKVTLTRNGQAFTVNNPTPYYVI
CCCCCCCCEEEEEEEEEEEEEECCCHHEEECCCCCCCEEEEEEECCCEEEECCCCCEEEE
ISNASTQKNGNPAAGFTPLVMPPKSSAPLNVKMDTVPVLTYVNDYGARLSLNFKCNGNNC
EECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCEEEEEEEECCCCEEEEEEEECCCCE
QVDAEQSRKG
EECHHHCCCC
>Mature Secondary Structure
MYTLTRSAKRVAPALALLVAAASFTTHASVTPDRTRLVFNEGDKSISVTLRNNDPKQPYL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHH
AQSWMEDEKGNKISSPLTVLPPVQRIDAMMNGQVKVQGMPDINKLPADRESMFYFNVREI
HHHHHCCCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PPKSNKPNTLQIALQTRIKLFWRPKALAKIDMREPWQHKVTLTRNGQAFTVNNPTPYYVI
CCCCCCCCEEEEEEEEEEEEEECCCHHEEECCCCCCCEEEEEEECCCEEEECCCCCEEEE
ISNASTQKNGNPAAGFTPLVMPPKSSAPLNVKMDTVPVLTYVNDYGARLSLNFKCNGNNC
EECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCEEEEEEEECCCCEEEEEEEECCCCE
QVDAEQSRKG
EECHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]