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The map label for this gene is yfgA

Identifier: 218548047

GI number: 218548047

Start: 659948

End: 660964

Strand: Direct

Name: yfgA

Synonym: EFER_0656

Alternate gene names: 218548047

Gene position: 659948-660964 (Clockwise)

Preceding gene: 218548046

Following gene: 218548048

Centisome position: 14.38

GC content: 52.9

Gene sequence:

>1017_bases
ATGAATACTGAAGCCACGCACGACCAAAATGAAGCACTTACCACTGGCGTTCGTCTACGTAACGCCCGTGAACAACTCGG
ACTCAGCCAGCAAGCGGTTGCTGAGCGACTTTGCCTGAAGGTTTCCACGGTACGCGATATTGAAGAAGATAAGGCACCTG
CCGATCTTGCTTCAACATTCCTGCGCGGATATATCCGCTCTTATGCGCGTCTGGTGCATATTCCAGAAGAAGAACTGCTG
CCGGGACTGGAAAAACAGGCTCCGTTACGGGCTGCAAAAGTTGCGCCAATGCAGAGTTTTTCCCTCGGAAAGCGCCGCAA
AAAACGTGACGGCTGGTTGATGACGTTCACCTGGCTGGTGCTGTTTGTTGTCATTGGCCTGAGCGGTGCCTGGTGGTGGC
AGGATCACAAAGCCCAGCAGGAAGAAATCACTACCATGGCTGATCAATCTTCTGCTGAGTTAAATGCTAACGGCACGAAT
TCACAAAGTATTCCACTGGAAAACAGCACGACAACTGTCCCGGAAGCTACACCGGCTCCTGCTGCTCCGGTGGATACCAC
TGCAAATGAACAAACGCCTGCTGCTTCTACCCCTGCGCCAGTCACTGAACCGCAGCAGAATGCCGTCGTTCCTCCTTCGC
AGGCTAATGTTGACACCGCTACAACTGCGCCAGCAGCACCTGCTACAACCACGACTCCAGATACTGCTACTCCGCTGCCA
ACCGATCAGGCAGGCGTGACCACGCCGGCGGCTGACCCGAATGCGTTGGTGATGAACTTTACTGCCGATTGCTGGCTGGA
AGTCACTGATGCTACCGGTAAAAAACTGTTTAGCGGTATGCAGCGTAAAGACGGTAATTTGAATTTAACCGGCCAGGCTC
CGTACAAACTGAAAATTGGTGCGCCAGCCGCAGTACAGATCCAGTATCAAGGGAAACCTGTCGATCTGAGTCGTTTTATC
AGAACTAACCAGGTTGCGCGTCTGACCCTAAATGCCGAACAATCACCGGCGCAGTAA

Upstream 100 bases:

>100_bases
GTATGATTAAAGCTAACTGATCTGATGTTTCGCGGTGTGGGTGAGCTTACCGCTCGCCGGCATCTGAATTCTCATTTACA
CGTACCAGCAGCTGTCGCGA

Downstream 100 bases:

>100_bases
CAGACGGGTAACGCGGGAGATTTTTCATGCATAACCAGGCTCCAATTCAACGTAGAAAATCAACACGGATTTACGTTGGG
AATGTGCCGATTGGCGATGG

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNTEATHDQNEALTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELNANGTN
SQSIPLENSTTTVPEATPAPAAPVDTTANEQTPAASTPAPVTEPQQNAVVPPSQANVDTATTAPAAPATTTTPDTATPLP
TDQAGVTTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI
RTNQVARLTLNAEQSPAQ

Sequences:

>Translated_338_residues
MNTEATHDQNEALTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELNANGTN
SQSIPLENSTTTVPEATPAPAAPVDTTANEQTPAASTPAPVTEPQQNAVVPPSQANVDTATTAPAAPATTTTPDTATPLP
TDQAGVTTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI
RTNQVARLTLNAEQSPAQ
>Mature_338_residues
MNTEATHDQNEALTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELNANGTN
SQSIPLENSTTTVPEATPAPAAPVDTTANEQTPAASTPAPVTEPQQNAVVPPSQANVDTATTAPAAPATTTTPDTATPLP
TDQAGVTTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFI
RTNQVARLTLNAEQSPAQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788864, Length=339, Percent_Identity=89.0855457227139, Blast_Score=575, Evalue=1e-165,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RODZ_ESCF3 (B7LKC2)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002381838.1
- EnsemblBacteria:   EBESCT00000125149
- GeneID:   7121457
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_0656
- GeneTree:   EBGT00050000010093
- HOGENOM:   HBG678691
- ProtClustDB:   PRK10856
- BioCyc:   EFER585054:EFER_0656-MONOMER
- HAMAP:   MF_02017
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 36405; Mature: 36405

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x286fc970)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEATHDQNEALTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLV
HHHHHHHHHHEECCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCEEHHHHHHH
LFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELNANGTNSQSIPLENSTTTVPEATPAP
HHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
AAPVDTTANEQTPAASTPAPVTEPQQNAVVPPSQANVDTATTAPAAPATTTTPDTATPLP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TDQAGVTTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIG
CCCCCCCCCCCCCCEEEEEECCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCEEEEEC
APAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
CCEEEEEEECCCCCCHHHHHHCCCEEEEEECCCCCCCH
>Mature Secondary Structure
MNTEATHDQNEALTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLV
HHHHHHHHHHEECCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCEEHHHHHHH
LFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELNANGTNSQSIPLENSTTTVPEATPAP
HHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
AAPVDTTANEQTPAASTPAPVTEPQQNAVVPPSQANVDTATTAPAAPATTTTPDTATPLP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TDQAGVTTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIG
CCCCCCCCCCCCCCEEEEEECCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCEEEEEC
APAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQSPAQ
CCEEEEEEECCCCCCHHHHHHCCCEEEEEECCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA