Definition Escherichia fergusonii ATCC 35469 chromosome, complete genome.
Accession NC_011740
Length 4,588,711

Click here to switch to the map view.

The map label for this gene is yahD [H]

Identifier: 218547829

GI number: 218547829

Start: 428149

End: 428754

Strand: Direct

Name: yahD [H]

Synonym: EFER_0417

Alternate gene names: 218547829

Gene position: 428149-428754 (Clockwise)

Preceding gene: 218547820

Following gene: 218547830

Centisome position: 9.33

GC content: 45.71

Gene sequence:

>606_bases
ATGAGTATAAAAAATCTACCTGCCGACTATTTATTGGCTGCACAACAGGGTGATATCGATAAAGTAAAAACTTGCCTTGC
GCTGGGTGTCGATATAAATACCTGCGATCGGCAGGGGAAAACGGCAATTACACTGGCAAGTTTATATCAGCAATATGCTT
GCGTTCAGGCATTAATTGATGCCGGTGCGGATATTAATAAACAAGACCAGACCTGTTTAAATCCTTTTTTAATGAGCTGC
CTGAACGGTGATTTAACGCTACTACAAATTATTTTACCGGCTAAACCAGACCTTAATTGTGTAACCCGTTTCGGCGGTGT
CGGCCTGACGCCTGCCTGTGAAAAAGGCCATTTAAGTATTGTAAAAGAGCTTTTGGCGCATACGGATATTAACGTTAACC
AGACCAACCATGTTGGCTGGACGCCGCTACTGGAAGCGATTGTGCTTAACGATGGCGGGATTAAACAGCAGGCGATTGTC
CAGTTATTACTTGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGTAAAACGCCGCTGGAACTGGCACGGGAACG
GGGCTTTGAAGAGATTGCTCAGTTGCTGATTGCCGCAGGCGCATAA

Upstream 100 bases:

>100_bases
GGCGAAATACGGCGAATTAAATTTAAGCGGGTTCTTTTATCAGATTATCGTTGCTATTCTCAATTCAGCGAAAACAGCCA
CAAAAACCAGGGGAATGTTA

Downstream 100 bases:

>100_bases
ACCGGGAGGTTTGCTATCAACACACCAGAAAGACGGTGTGTGTGGGCGCTAACTGCGGATACTGATTTTCTGGCGCAGCG
GGGGCAAGGACAGGTTGAAC

Product: protein with ankyrin domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALIDAGADINKQDQTCLNPFLMSC
LNGDLTLLQIILPAKPDLNCVTRFGGVGLTPACEKGHLSIVKELLAHTDINVNQTNHVGWTPLLEAIVLNDGGIKQQAIV
QLLLEHGASPHLTDKYGKTPLELARERGFEEIAQLLIAAGA

Sequences:

>Translated_201_residues
MSIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALIDAGADINKQDQTCLNPFLMSC
LNGDLTLLQIILPAKPDLNCVTRFGGVGLTPACEKGHLSIVKELLAHTDINVNQTNHVGWTPLLEAIVLNDGGIKQQAIV
QLLLEHGASPHLTDKYGKTPLELARERGFEEIAQLLIAAGA
>Mature_200_residues
SIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALIDAGADINKQDQTCLNPFLMSCL
NGDLTLLQIILPAKPDLNCVTRFGGVGLTPACEKGHLSIVKELLAHTDINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQ
LLLEHGASPHLTDKYGKTPLELARERGFEEIAQLLIAAGA

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI268607595, Length=190, Percent_Identity=28.9473684210526, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI62988328, Length=190, Percent_Identity=28.9473684210526, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI10863929, Length=194, Percent_Identity=30.4123711340206, Blast_Score=84, Evalue=6e-17,
Organism=Homo sapiens, GI24233530, Length=188, Percent_Identity=29.2553191489362, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI68131557, Length=189, Percent_Identity=30.1587301587302, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI304361760, Length=180, Percent_Identity=30, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI304361757, Length=180, Percent_Identity=30, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI38683816, Length=191, Percent_Identity=27.7486910994764, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780355, Length=253, Percent_Identity=26.4822134387352, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI215598574, Length=253, Percent_Identity=26.0869565217391, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780359, Length=253, Percent_Identity=26.4822134387352, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780357, Length=253, Percent_Identity=26.4822134387352, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI70780353, Length=253, Percent_Identity=26.4822134387352, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI38683807, Length=191, Percent_Identity=27.7486910994764, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI52426735, Length=263, Percent_Identity=26.615969581749, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI255982572, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI7705831, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI52426737, Length=262, Percent_Identity=26.7175572519084, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI188595682, Length=262, Percent_Identity=26.7175572519084, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI55741641, Length=188, Percent_Identity=30.3191489361702, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI157743284, Length=189, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI32967601, Length=188, Percent_Identity=27.1276595744681, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI116875852, Length=186, Percent_Identity=30.6451612903226, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI46519147, Length=191, Percent_Identity=27.2251308900524, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI46519154, Length=191, Percent_Identity=27.7486910994764, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI39812133, Length=174, Percent_Identity=29.3103448275862, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI37620163, Length=191, Percent_Identity=27.2251308900524, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI46519151, Length=191, Percent_Identity=27.7486910994764, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI30425444, Length=186, Percent_Identity=30.1075268817204, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI89363047, Length=190, Percent_Identity=26.8421052631579, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI96975023, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI157739945, Length=177, Percent_Identity=30.5084745762712, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI224809472, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI224809470, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI224809468, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI224809478, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809476, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809474, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI34304379, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI34304381, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI70995267, Length=192, Percent_Identity=27.6041666666667, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI148596917, Length=173, Percent_Identity=26.0115606936416, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI224465233, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI118150656, Length=175, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI18252778, Length=203, Percent_Identity=30.5418719211823, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1786511, Length=201, Percent_Identity=97.5124378109453, Blast_Score=398, Evalue=1e-112,
Organism=Caenorhabditis elegans, GI71981411, Length=220, Percent_Identity=28.1818181818182, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71981414, Length=220, Percent_Identity=28.1818181818182, Blast_Score=73, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17542700, Length=220, Percent_Identity=28.1818181818182, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71981389, Length=220, Percent_Identity=28.1818181818182, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25145251, Length=222, Percent_Identity=28.3783783783784, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17541898, Length=191, Percent_Identity=31.9371727748691, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17541900, Length=191, Percent_Identity=31.9371727748691, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193206531, Length=191, Percent_Identity=31.9371727748691, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193206533, Length=191, Percent_Identity=31.9371727748691, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646035, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212646031, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212646033, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221330482, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI45550479, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221330480, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI45551135, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221330476, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28573593, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221330474, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281363919, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221330478, Length=191, Percent_Identity=31.413612565445, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24581260, Length=201, Percent_Identity=31.3432835820896, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24581258, Length=201, Percent_Identity=31.3432835820896, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281359521, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281359519, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28558752, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28558750, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28558756, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28558754, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI161082096, Length=190, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161082110, Length=190, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161082106, Length=190, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161082081, Length=190, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161082099, Length=190, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161082085, Length=190, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161082092, Length=190, Percent_Identity=29.4736842105263, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161082089, Length=190, Percent_Identity=29.4736842105263, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571867, Length=192, Percent_Identity=30.2083333333333, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28571865, Length=192, Percent_Identity=30.2083333333333, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24650843, Length=225, Percent_Identity=26.2222222222222, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281366282, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI281366284, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI161084152, Length=196, Percent_Identity=27.0408163265306, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI161084156, Length=196, Percent_Identity=27.0408163265306, Blast_Score=63, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 21596; Mature: 21465

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALID
CCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AGADINKQDQTCLNPFLMSCLNGDLTLLQIILPAKPDLNCVTRFGGVGLTPACEKGHLSI
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCHHH
VKELLAHTDINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQLLLEHGASPHLTDKYGKTP
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCH
LELARERGFEEIAQLLIAAGA
HHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAITLASLYQQYACVQALID
CCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AGADINKQDQTCLNPFLMSCLNGDLTLLQIILPAKPDLNCVTRFGGVGLTPACEKGHLSI
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCHHH
VKELLAHTDINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQLLLEHGASPHLTDKYGKTP
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCH
LELARERGFEEIAQLLIAAGA
HHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]