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The map label for this gene is ygaU

Identifier: 218547820

GI number: 218547820

Start: 417531

End: 417980

Strand: Direct

Name: ygaU

Synonym: EFER_0407

Alternate gene names: 218547820

Gene position: 417531-417980 (Clockwise)

Preceding gene: 218547819

Following gene: 218547829

Centisome position: 9.1

GC content: 48.0

Gene sequence:

>450_bases
ATGGGTCTGTTCAATTTTGTGAAAGATGCCGGAGAAAAACTCTGGGACGCGGTTACAGGTCAGCACGATAAAGACGATCA
GGCGAAAAAGGTGCAGGAGCATCTGAACAAAACCGGTATACCTGATGCCGATAAAGTGAACATTCAAATTGCCGACGGCA
AAGCGACGGTCACTGGTGACGGCTTAAGTCAGGAGGCGAAGGAGAAAATCCTTGTTGCGGTGGGGAATATTTCCGGTATT
GCCAGTGTCGATGATCAGGTGAAAACGGCGACACCAGCCACTGCCAGCCAGTTTTATACCGTTAAGTCTGGCGACACTCT
GAGTGCCATTTCCAAACAGGTCTACGGTAACGCCAATCTGTACAATAAAATCTTCGAAGCGAATAAACCGATGCTGAAAA
GCCCGGATAAAATTTATCCGGGGCAGGTGTTACGTATTCCTGAAGAGTAG

Upstream 100 bases:

>100_bases
TGCAAACCCGCGATTAAACCTGTCCTCACCCCCGCGGCGTTAACGCGCCGCGTTCCTCTGCTACACTTTCTGAGTGTTTC
CGTTAACGAATGAGGTAGCT

Downstream 100 bases:

>100_bases
TTAATTGCCAGCCATCGCCTGCTGGATAATGGGAATTGGCGTCAGTAAATGCTGGCGCATTAACTCACTGGCGCGCGCGG
TATCTCGCGCCAGTACCGCC

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGI
ASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE

Sequences:

>Translated_149_residues
MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGI
ASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE
>Mature_148_residues
GLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIA
SVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat

Homologues:

Organism=Escherichia coli, GI1789019, Length=149, Percent_Identity=100, Blast_Score=302, Evalue=5e-84,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): YGAU_ECOL6 (P0ADE7)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_755095.1
- ProteinModelPortal:   P0ADE7
- SMR:   P0ADE7
- PRIDE:   P0ADE7
- EnsemblBacteria:   EBESCT00000040636
- GeneID:   1038974
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c3213
- GeneTree:   EBGT00050000009060
- HOGENOM:   HBG701205
- OMA:   AIAKKFY
- ProtClustDB:   PRK11198
- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004
- SMART:   SM00749
- SMART:   SM00257

Pfam domain/function: PF04972 BON; PF01476 LysM

EC number: NA

Molecular weight: Translated: 16063; Mature: 15932

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGD
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECC
GLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANL
CCCHHHHHEEEEEECCCCCCCCCCCCHHCCCCCCCHHEEEECCCCHHHHHHHHHCCCCHH
YNKIFEANKPMLKSPDKIYPGQVLRIPEE
HHHHHHCCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
GLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDADKVNIQIADGKATVTGD
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECC
GLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANL
CCCHHHHHEEEEEECCCCCCCCCCCCHHCCCCCCCHHEEEECCCCHHHHHHHHHCCCCHH
YNKIFEANKPMLKSPDKIYPGQVLRIPEE
HHHHHHCCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157