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The map label for this gene is yahB [H]

Identifier: 218547827

GI number: 218547827

Start: 426370

End: 427302

Strand: Reverse

Name: yahB [H]

Synonym: EFER_0415

Alternate gene names: 218547827

Gene position: 427302-426370 (Counterclockwise)

Preceding gene: 218547828

Following gene: 218547826

Centisome position: 9.31

GC content: 48.98

Gene sequence:

>933_bases
ATGAACTCAATTTTCACCGAAGAAAACCTGTTGGCGTTTACTACCGCTGCGCGTTTTAGCAGCTTCAGTAAAGCGGCAGA
CGAGTTGGGTTTAACCACTTCCGCCATTAGCTACACCATCAAGCGAATGGAAACGGGGCTGGATGTGGTGCTGTTCACCC
GTAACACCCGCAGTATTGAGTTAACCGAGTCCGGGCGTTATTTTTTCCGCAAAGCTACCGACCTGCTGAATGATTTTCAC
GCCATCAAACGCAGCATTGATACTATTTCGCAGGGCATTGAAGCACGGGTTCGCATTTGTATTAACCAGCTACTTTATAC
ACCCAAACACACCGCGCGCTTATTGCAGGTGCTGAAAAAGCAATTTCCAACCTGCCAGATTACCGTGACGACCGAAGTGT
ATAATGGTGTCTGGGATGCGATTATTAATAATCAGGCGAATATCGCTATTGGCGCGCCCGACACGCTGCTGGACGGTGGC
GGCATTGATTACACTGAAATTGGCACAATTCGCTGGGCTTTTGCTATCGCCCCGGATCACCCGTTAGCCTTTGTGCCAGA
GCCGATCGCTGAAAGTCAGCTACGTCTCTACCCCAATATCATGGTGGAAGATACCGCGCATACGATTAATAAAAAAGTGG
GCTGGTTGCTGCATGGGCAGGAGTCGATTCTGGTGCCAGATTTCAACACCAAATGCCAGTGCCAGATTTTAGGTGAAGGG
ATTGGTTTTTTGCCGGATTACATGGTCCGCGAGGCGATGGCGCAATCCCTGCTGGTTACCCGACAAATCCATAACCCGCG
CCAGGATTCGCGCATGTTACTGGCAACTCAACACTCTGCCACCGGTCAGGTGACGCAGTGGATAAAAAAACAATTTGGAC
AGAAAGGTATTTTAACCGCGATTTATGAAGATTTATTGCACCGTGACAATTAA

Upstream 100 bases:

>100_bases
GGGTATTAAAAGTTATTCAAAAATGATTATCTATCTTTAACCGATACCTCTACAGTCATGACTGGAGAAATTCAAATTAG
ATAATGGCGGGAATGGTTTA

Downstream 100 bases:

>100_bases
GAAAATATATGCGCGAACAGGAATTTTATTATTTTTACATTGTTATGAAAAACATTCCAGGTAAATGACCCGATTTTTTA
TATCTCAATAAACTGTATTA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNSIFTEENLLAFTTAARFSSFSKAADELGLTTSAISYTIKRMETGLDVVLFTRNTRSIELTESGRYFFRKATDLLNDFH
AIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGG
GIDYTEIGTIRWAFAIAPDHPLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG
IGFLPDYMVREAMAQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFGQKGILTAIYEDLLHRDN

Sequences:

>Translated_310_residues
MNSIFTEENLLAFTTAARFSSFSKAADELGLTTSAISYTIKRMETGLDVVLFTRNTRSIELTESGRYFFRKATDLLNDFH
AIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGG
GIDYTEIGTIRWAFAIAPDHPLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG
IGFLPDYMVREAMAQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFGQKGILTAIYEDLLHRDN
>Mature_310_residues
MNSIFTEENLLAFTTAARFSSFSKAADELGLTTSAISYTIKRMETGLDVVLFTRNTRSIELTESGRYFFRKATDLLNDFH
AIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGG
GIDYTEIGTIRWAFAIAPDHPLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG
IGFLPDYMVREAMAQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFGQKGILTAIYEDLLHRDN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=310, Percent_Identity=95.8064516129032, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI1786713, Length=292, Percent_Identity=37.6712328767123, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1787949, Length=295, Percent_Identity=29.4915254237288, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI87082024, Length=283, Percent_Identity=25.0883392226148, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789492, Length=298, Percent_Identity=29.5302013422819, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI145693105, Length=175, Percent_Identity=25.7142857142857, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=263, Percent_Identity=25.8555133079848, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787589, Length=275, Percent_Identity=26.5454545454545, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34846; Mature: 34846

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIFTEENLLAFTTAARFSSFSKAADELGLTTSAISYTIKRMETGLDVVLFTRNTRSIE
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCEEE
LTESGRYFFRKATDLLNDFHAIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKK
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGGGIDYTEIGTIRWAFAIAPDH
HCCEEEEEEEHHHHHHHHHHHHCCCCCEEECCCCCEECCCCCCCEEECCEEEEEEECCCC
PLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG
CCEECCCCHHCCHHEECCCEEEECHHHHHHHHHCEEEECCCEEEECCCCCCEEEEEECCC
IGFLPDYMVREAMAQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFGQKGILTA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHH
IYEDLLHRDN
HHHHHHHCCC
>Mature Secondary Structure
MNSIFTEENLLAFTTAARFSSFSKAADELGLTTSAISYTIKRMETGLDVVLFTRNTRSIE
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCEEE
LTESGRYFFRKATDLLNDFHAIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKK
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGGGIDYTEIGTIRWAFAIAPDH
HCCEEEEEEEHHHHHHHHHHHHCCCCCEEECCCCCEECCCCCCCEEECCEEEEEEECCCC
PLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG
CCEECCCCHHCCHHEECCCEEEECHHHHHHHHHCEEEECCCEEEECCCCCCEEEEEECCC
IGFLPDYMVREAMAQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFGQKGILTA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHH
IYEDLLHRDN
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]