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The map label for this gene is syd

Identifier: 218547688

GI number: 218547688

Start: 283099

End: 283644

Strand: Direct

Name: syd

Synonym: EFER_0267

Alternate gene names: 218547688

Gene position: 283099-283644 (Clockwise)

Preceding gene: 218547682

Following gene: 218547689

Centisome position: 6.17

GC content: 48.35

Gene sequence:

>546_bases
GTGGACGAATTGACCGCGCAAGCCCTACGAGATTTTACGACCCGTTACTGCGATGCATGGCATGAAAAACACCATAGTTG
GCCGCTTAGCGAAGAACTTTATGGTGTTCCGTCACCATGCATTATTTCGACAACCAGCGACGCAGTGTACTGGCAACCAC
AGCCATTCGTGGGTGAGCAAAATCTTGCCGCCGTTGAGCGCGCTTTTGATATTGTTCTGCAACCGGCAATCCAGACGTTT
TACACGACTCAGTTTGCCGGGGATATGCATGCGCAGTTTGCTGAACATACTCTGACATTGCTGCAAACCTGGAGTGAGGA
TGATTTCAGACGTGTGCAGGAAAATCTTATCGGCCATCTGGTAACACAGAAACGTCTTAAGCTTTCTCCTACGCTATTTA
TCGCGACGCTGGAGAATGAACTCGACGTGATTTCCCTGTGTAATCTAAGTGGAGAAGTGTGTAAAGAGACTCTCGGAACA
CGTAATCGTCAGGTTCTTGCGCCATCTCTTGCGGAATTCCTTAAGCAGCTTAATCCTCTCCTGTAA

Upstream 100 bases:

>100_bases
TGAAGCGCCTGATGGTTTTCATAAGAAGACATGTTTCACCGTGATAAACCAGTTACACTAAGCGACAAGTGTATCCTGGC
TTATGTGAAGAGAGAAATTA

Downstream 100 bases:

>100_bases
TCCACAATACCCAGAACGTTGTAGGAGATCTCTTACACACCTTGTAGGAGATCTGCAGCAAATAACTGAAGGGGTAATAA
CAATTCGGCAGTTAAATGCA

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDELTAQALRDFTTRYCDAWHEKHHSWPLSEELYGVPSPCIISTTSDAVYWQPQPFVGEQNLAAVERAFDIVLQPAIQTF
YTTQFAGDMHAQFAEHTLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLSPTLFIATLENELDVISLCNLSGEVCKETLGT
RNRQVLAPSLAEFLKQLNPLL

Sequences:

>Translated_181_residues
MDELTAQALRDFTTRYCDAWHEKHHSWPLSEELYGVPSPCIISTTSDAVYWQPQPFVGEQNLAAVERAFDIVLQPAIQTF
YTTQFAGDMHAQFAEHTLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLSPTLFIATLENELDVISLCNLSGEVCKETLGT
RNRQVLAPSLAEFLKQLNPLL
>Mature_181_residues
MDELTAQALRDFTTRYCDAWHEKHHSWPLSEELYGVPSPCIISTTSDAVYWQPQPFVGEQNLAAVERAFDIVLQPAIQTF
YTTQFAGDMHAQFAEHTLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLSPTLFIATLENELDVISLCNLSGEVCKETLGT
RNRQVLAPSLAEFLKQLNPLL

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=181, Percent_Identity=85.0828729281768, Blast_Score=324, Evalue=2e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_ESCF3 (B7LVU6)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002381479.1
- EnsemblBacteria:   EBESCT00000122992
- GeneID:   7123465
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_0267
- GeneTree:   EBGT00050000010627
- HOGENOM:   HBG298615
- ProtClustDB:   PRK04968
- BioCyc:   EFER585054:EFER_0267-MONOMER
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 20635; Mature: 20635

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELTAQALRDFTTRYCDAWHEKHHSWPLSEELYGVPSPCIISTTSDAVYWQPQPFVGEQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEECCCCEEEECCCCCCCCC
NLAAVERAFDIVLQPAIQTFYTTQFAGDMHAQFAEHTLTLLQTWSEDDFRRVQENLIGHL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VTQKRLKLSPTLFIATLENELDVISLCNLSGEVCKETLGTRNRQVLAPSLAEFLKQLNPL
HHHHHHCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHCCCCCEEECHHHHHHHHHHCCC
L
C
>Mature Secondary Structure
MDELTAQALRDFTTRYCDAWHEKHHSWPLSEELYGVPSPCIISTTSDAVYWQPQPFVGEQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEECCCCEEEECCCCCCCCC
NLAAVERAFDIVLQPAIQTFYTTQFAGDMHAQFAEHTLTLLQTWSEDDFRRVQENLIGHL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VTQKRLKLSPTLFIATLENELDVISLCNLSGEVCKETLGTRNRQVLAPSLAEFLKQLNPL
HHHHHHCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHCCCCCEEECHHHHHHHHHHCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA