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The map label for this gene is ygdD [H]

Identifier: 218547681

GI number: 218547681

Start: 275027

End: 275422

Strand: Direct

Name: ygdD [H]

Synonym: EFER_0260

Alternate gene names: 218547681

Gene position: 275027-275422 (Clockwise)

Preceding gene: 218547680

Following gene: 218547682

Centisome position: 5.99

GC content: 51.52

Gene sequence:

>396_bases
ATGACCAGCCGTTTTATGCTGATTTTTGCCGCCATCAGCGGTTTCATTTTTGTTGCTCTGGGGGCTTTTGGCGCTCATGT
CCTGAGCAAAACCCTGGGTGTGGTTGAAATGGGTTGGATCCAGACCGGCCTTGAGTATCAGGCGTTTCATACTCTGGCGA
TCTTAGGTCTGGCGGTGGCGATGCAACGTCGGATAAGCATCTGGTTCTACTGGAGCAGTGTATTTCTGGCGTTAGGTACG
GTGCTGTTTAGCGGCAGCCTTTATTGCCTGGCGCTCTCTCATTTGCGCCTGTGGGCGTATGTTACTCCTGTCGGTGGCGT
TAGCTTTCTGGCAGGTTGGGTTCTCATGTTAATTGGCGCTATCCGTTTGAAGCGTAAGGGCGTAAGTCATGAATAA

Upstream 100 bases:

>100_bases
TAAAATAGCGGCTTTCCGCCAGTGGATTCTGGAAAAAGCGGCGAGTGAACAAGAGAAATTCCGCTTTCGTTACGAACAAT
AACTTACGTAGGGTACTAGC

Downstream 100 bases:

>100_bases
GGTTGTATTGTTGTGTCGCCCAGGCTTCGAAAAAGAGTGTGCCGCAGAAATCACGGACAAAGCAGGGCGACAAGAGATTT
TCGGTTTTGCTCGTGTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTSRFMLIFAAISGFIFVALGAFGAHVLSKTLGVVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGT
VLFSGSLYCLALSHLRLWAYVTPVGGVSFLAGWVLMLIGAIRLKRKGVSHE

Sequences:

>Translated_131_residues
MTSRFMLIFAAISGFIFVALGAFGAHVLSKTLGVVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGT
VLFSGSLYCLALSHLRLWAYVTPVGGVSFLAGWVLMLIGAIRLKRKGVSHE
>Mature_130_residues
TSRFMLIFAAISGFIFVALGAFGAHVLSKTLGVVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTV
LFSGSLYCLALSHLRLWAYVTPVGGVSFLAGWVLMLIGAIRLKRKGVSHE

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=131, Percent_Identity=96.1832061068702, Blast_Score=249, Evalue=5e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14401; Mature: 14270

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRFMLIFAAISGFIFVALGAFGAHVLSKTLGVVEMGWIQTGLEYQAFHTLAILGLAVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAYVTPVGGVSFLAGWVLMLIGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IRLKRKGVSHE
HHHHHCCCCCC
>Mature Secondary Structure 
TSRFMLIFAAISGFIFVALGAFGAHVLSKTLGVVEMGWIQTGLEYQAFHTLAILGLAVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAYVTPVGGVSFLAGWVLMLIGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IRLKRKGVSHE
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]