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The map label for this gene is yadD [H]

Identifier: 218547588

GI number: 218547588

Start: 168619

End: 169551

Strand: Direct

Name: yadD [H]

Synonym: EFER_0153

Alternate gene names: 218547588

Gene position: 168619-169551 (Clockwise)

Preceding gene: 218547586

Following gene: 218547604

Centisome position: 3.67

GC content: 48.87

Gene sequence:

>933_bases
ATGGATGCACCGAGTACCACACCGCATGACGCGGTATTTAAACAATTTTTAATGCATGCGGAGACGGCTCGCGACTTTCT
GGATATCCATTTGCCAGCGGAGCTACGCGAACTGTGTGACCTCGACACGCTGCATCTTGAGTCGGGGAGTTTTATTGAAG
AAAGCCTGAAAGGGCACAGCACTGATGTGCTCTATTCCGTGCAAATGCAGGGTAATACGGGCTATCTACATGTTGTGATT
GAACACCAAAGCAAGCCGGACAAAAAAATGGCGTTTCGTATGATGCGTTATTCTATTGCCGCCATGCACCGGCATCTGGA
GGCTGACCACGATAAGCTGCCGCTGGTGGTGCCGATTCTGTTTTATCAGGGCGAGGCCACACCTTATCCACTCTCAATGT
GCTGGTTTGATATGTTTTACTCGCCGGAGCTGGCGCGACGCGTCTATAACAGTCCTTTCCCGCTGGTGGATATCACTATC
ACACCGGATGACGAAATCATGCAACATCGGCGGATTGCGATTCTCGAACTGCTGCAAAAACATATTCGCCAGCGCGACTT
AATGTTATTGCTGGAGCAACTGGTCACGCTGATTGACGAAGGGTACACTAGCGGAAGTCAGTTAGTTGCCATGCAAAACT
ATATGCTGCAACGCGGTCATACTGAACAAGCGGATTTGTTTTATGGTGTGGTGAGAGACAGGGAAACGGGAGGGGAGTCT
ATGATGACGCTGGCGCAGTGGTTTGAAGAGAAGGGGATTGAGAAGGGAATGGAGAAAGGAATGGAGAAAGGAATTGAGAA
GGGGATTCAGCAGGGAAGACAGGAAGTAAGTCAGGAATTCGCCCTGCGTCTTCTGAGTAAAGGAATGTCTCGGGAAGACG
TTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAAATGATTAACTAA

Upstream 100 bases:

>100_bases
TTCTCTGAACGCTGCTCGGTAAACACTAAAGAGGCGGCTGACGACGGCGCGCCTTGACTGGATACTGCCTTCACGCAAGA
CAACACGGAAGGCAGGGAAG

Downstream 100 bases:

>100_bases
GTTGTCTGTATTATCAGTTATAGCCAGATAATTGTTATTGTTAACTGACCAGATAATTAAGGGAACCTATGGACATAAAG
ACACGGAGAGAAACCAGGCA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDAPSTTPHDAVFKQFLMHAETARDFLDIHLPAELRELCDLDTLHLESGSFIEESLKGHSTDVLYSVQMQGNTGYLHVVI
EHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITI
TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVVRDRETGGES
MMTLAQWFEEKGIEKGMEKGMEKGIEKGIQQGRQEVSQEFALRLLSKGMSREDVAEMANLPLAEIDKMIN

Sequences:

>Translated_310_residues
MDAPSTTPHDAVFKQFLMHAETARDFLDIHLPAELRELCDLDTLHLESGSFIEESLKGHSTDVLYSVQMQGNTGYLHVVI
EHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITI
TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVVRDRETGGES
MMTLAQWFEEKGIEKGMEKGMEKGIEKGIQQGRQEVSQEFALRLLSKGMSREDVAEMANLPLAEIDKMIN
>Mature_310_residues
MDAPSTTPHDAVFKQFLMHAETARDFLDIHLPAELRELCDLDTLHLESGSFIEESLKGHSTDVLYSVQMQGNTGYLHVVI
EHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITI
TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVVRDRETGGES
MMTLAQWFEEKGIEKGMEKGMEKGIEKGIQQGRQEVSQEFALRLLSKGMSREDVAEMANLPLAEIDKMIN

Specific function: Unknown

COG id: COG5464

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yadD/yfaD/yhgA/yjiP family [H]

Homologues:

Organism=Escherichia coli, GI1786324, Length=310, Percent_Identity=93.8709677419355, Blast_Score=597, Evalue=1e-172,
Organism=Escherichia coli, GI1788643, Length=297, Percent_Identity=51.5151515151515, Blast_Score=309, Evalue=1e-85,
Organism=Escherichia coli, GI1788577, Length=305, Percent_Identity=48.8524590163934, Blast_Score=294, Evalue=5e-81,
Organism=Escherichia coli, GI1789816, Length=249, Percent_Identity=53.0120481927711, Blast_Score=282, Evalue=2e-77,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010106
- InterPro:   IPR006842 [H]

Pfam domain/function: PF04754 Transposase_31 [H]

EC number: NA

Molecular weight: Translated: 35666; Mature: 35666

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAPSTTPHDAVFKQFLMHAETARDFLDIHLPAELRELCDLDTLHLESGSFIEESLKGHS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEECCCCCHHHHHHCCCC
TDVLYSVQMQGNTGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPIL
CEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
FYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQK
EECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
HIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVVRDRETGGES
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
MMTLAQWFEEKGIEKGMEKGMEKGIEKGIQQGRQEVSQEFALRLLSKGMSREDVAEMANL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
PLAEIDKMIN
CHHHHHHHCC
>Mature Secondary Structure
MDAPSTTPHDAVFKQFLMHAETARDFLDIHLPAELRELCDLDTLHLESGSFIEESLKGHS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEECCCCCHHHHHHCCCC
TDVLYSVQMQGNTGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPIL
CEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
FYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQK
EECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
HIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVVRDRETGGES
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH
MMTLAQWFEEKGIEKGMEKGMEKGIEKGIQQGRQEVSQEFALRLLSKGMSREDVAEMANL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
PLAEIDKMIN
CHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]