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The map label for this gene is ppdD [H]

Identifier: 218547563

GI number: 218547563

Start: 138964

End: 139401

Strand: Reverse

Name: ppdD [H]

Synonym: EFER_0128

Alternate gene names: 218547563

Gene position: 139401-138964 (Counterclockwise)

Preceding gene: 218547564

Following gene: 218547562

Centisome position: 3.04

GC content: 49.77

Gene sequence:

>438_bases
ATGGACAAACAACGCGGTTTTACTCTTATCGAGCTGATGGTGGTCATCGGTATTATTGCCATCCTGAGTGCCATTGGCAT
TCCTGCTTATCAAAACTACCTTCGCAAAGCAGCACTGACCGATATGCTGCAAACTTTTGTTCCTTACCGAACCGCAGTCG
AGTTGTGCGCACTTGAACATGGCGGAGTCACCACCTGCGATGCGGGGAGCAATGGTATTCCTTCTGCTACCACCACACGC
TATGTCTCGGGTATGAGTATCGCGCAAGGCGTAGTGACGCTTACCGGCCAGGAAAGTCTCAACGGCCTAAACGTTGTTAT
GACGCCAAACTGGAGTAACGGTAACGGCATCACTGGCTGGACACGTAACTGCAATATCCAAAGCGATAGCGCCTTACAAC
AGGCGTGTGAAGATGTTTTCCGTTTTAACGGCAATTAA

Upstream 100 bases:

>100_bases
TTAAAAACCTCTGGAGCGGCTTTCCCGTTTTGATTTTTCATCCTCGCCAGCCTGAATTGTGTTTGTCAAAGTAGCGCCAA
CGTAATCATGGAGTGAAAAA

Downstream 100 bases:

>100_bases
GGAGCGGCTATGAATAACGCACAACTTACTGCGCTCTGCCAACGTTACCAGGGCATCTTGTTAGATAGTGATCAAGAAGT
GATTAACGTTGCCGTTGTGG

Product: major pilin subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGVTTCDAGSNGIPSATTTR
YVSGMSIAQGVVTLTGQESLNGLNVVMTPNWSNGNGITGWTRNCNIQSDSALQQACEDVFRFNGN

Sequences:

>Translated_145_residues
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGVTTCDAGSNGIPSATTTR
YVSGMSIAQGVVTLTGQESLNGLNVVMTPNWSNGNGITGWTRNCNIQSDSALQQACEDVFRFNGN
>Mature_145_residues
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGVTTCDAGSNGIPSATTTR
YVSGMSIAQGVVTLTGQESLNGLNVVMTPNWSNGNGITGWTRNCNIQSDSALQQACEDVFRFNGN

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=143, Percent_Identity=90.2097902097902, Blast_Score=273, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 15522; Mature: 15522

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
GGVTTCDAGSNGIPSATTTRYVSGMSIAQGVVTLTGQESLNGLNVVMTPNWSNGNGITGW
CCCEEECCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCCCCC
TRNCNIQSDSALQQACEDVFRFNGN
CCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
GGVTTCDAGSNGIPSATTTRYVSGMSIAQGVVTLTGQESLNGLNVVMTPNWSNGNGITGW
CCCEEECCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCCCCC
TRNCNIQSDSALQQACEDVFRFNGN
CCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]