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The map label for this gene is oppC [H]

Identifier: 218236056

GI number: 218236056

Start: 1202924

End: 1203940

Strand: Direct

Name: oppC [H]

Synonym: BCB4264_A1236

Alternate gene names: 218236056

Gene position: 1202924-1203940 (Clockwise)

Preceding gene: 218233900

Following gene: 218235469

Centisome position: 22.2

GC content: 36.87

Gene sequence:

>1017_bases
ATGATGAAAGATGTACAAAAATTATCTCCAGATTTATTTCAACAAGCCAATCAAAATAATGTTGATAATGAAGTCATTGC
CCGTCCAAGCCTAACGTTTTGGCAAGATGTAAGAAGACGTTTATTCCAACATAAAGGTGCGATGCTTGGCCTTGTATTAT
TAGTTATCATTGCACTATTAGCGATTTTTGGACCGATGGTAAGTAAACACTCGTATAAAGAGCAAGATTTAGGTCGAGCG
AAATTACCACCAAAAATTCCAGTTATTGAAAATGTTCATTGGTTACCATTTGACGGTACAGATCAATATGGTGTTGACCA
ATATGAAAAACGTGATATTAAAGAGTACTTCTGGTTTGGTACAGATGATCTTGGCCGTGACTTATGGACAAGAACATGGG
AAGGTACACGCGTATCATTATATATCGCTCTTTTAGCAGCAGCAATTGACTTAGTAATTGGGGTTGCATACGGAGGTATT
TCAGCATTCTACGGCGGTAGAGTAGATAACATTATGCAACGTATTATGGAGATTATTAACGGTATTCCATACTTAATCAT
CGTTATTTTAATGGTAATCATTATGGGATCTGGTATTTGGTCAATTACACTCGCGATGGCGATTACAGGTTGGATAGGGA
TGTCGCGTATTGTTCGTGGACAAATCTTAAAGTTAAAAAACCAAGAATATGTATTAGCATCTCGTACATTAGGTGCAACA
AATACACAATTAATTGTGAAACATTTAATTCCAAACGTAATGGGACCTATTATCGTAATGACAATGTTTACAATTCCATC
AGCGGTGTTTGGTGAAGCGTTCTTAAGTTTCATCGGTTTAGGAATTCAGCCGCCATTTGCGTCACTAGGTTCTCTTGTAA
ATGATGGTTATAAATCTATTCAAACGTATCCGCATATGATGTTCATCCCTGCGGTTGTCATCAGTATATTAATTTTAGCG
TTTAACTTAATGGCAGACGGATTACGCGACGCGTTAGATCCAAAAATGCGTAAGTAA

Upstream 100 bases:

>100_bases
CTACGATTTTCTATAGTGCAATCTTCATTTTAGTTATTTTCATTGTAGATATTTTATACGGAATTATTGATCCTCGTATT
CGTTTAGCGGGAGGGAAAAA

Downstream 100 bases:

>100_bases
AAGAGGGGAGAGGCAAAGATGAAAACATTGTTAGAGGTAAAAGATTTACAAGTCTCCTTTGATACACATGCAGGTGAAGT
ACAAGCTGTACGCGGCGTTA

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KC [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MMKDVQKLSPDLFQQANQNNVDNEVIARPSLTFWQDVRRRLFQHKGAMLGLVLLVIIALLAIFGPMVSKHSYKEQDLGRA
KLPPKIPVIENVHWLPFDGTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIALLAAAIDLVIGVAYGGI
SAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIMGSGIWSITLAMAITGWIGMSRIVRGQILKLKNQEYVLASRTLGAT
NTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGSLVNDGYKSIQTYPHMMFIPAVVISILILA
FNLMADGLRDALDPKMRK

Sequences:

>Translated_338_residues
MMKDVQKLSPDLFQQANQNNVDNEVIARPSLTFWQDVRRRLFQHKGAMLGLVLLVIIALLAIFGPMVSKHSYKEQDLGRA
KLPPKIPVIENVHWLPFDGTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIALLAAAIDLVIGVAYGGI
SAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIMGSGIWSITLAMAITGWIGMSRIVRGQILKLKNQEYVLASRTLGAT
NTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGSLVNDGYKSIQTYPHMMFIPAVVISILILA
FNLMADGLRDALDPKMRK
>Mature_338_residues
MMKDVQKLSPDLFQQANQNNVDNEVIARPSLTFWQDVRRRLFQHKGAMLGLVLLVIIALLAIFGPMVSKHSYKEQDLGRA
KLPPKIPVIENVHWLPFDGTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIALLAAAIDLVIGVAYGGI
SAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIMGSGIWSITLAMAITGWIGMSRIVRGQILKLKNQEYVLASRTLGAT
NTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGSLVNDGYKSIQTYPHMMFIPAVVISILILA
FNLMADGLRDALDPKMRK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=328, Percent_Identity=35.3658536585366, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1787054, Length=328, Percent_Identity=29.2682926829268, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=34.9794238683128, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787760, Length=284, Percent_Identity=33.4507042253521, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1789964, Length=319, Percent_Identity=32.6018808777429, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788505, Length=278, Percent_Identity=27.6978417266187, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787549, Length=305, Percent_Identity=25.5737704918033, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37860; Mature: 37860

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKDVQKLSPDLFQQANQNNVDNEVIARPSLTFWQDVRRRLFQHKGAMLGLVLLVIIALL
CCCHHHHCCHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AIFGPMVSKHSYKEQDLGRAKLPPKIPVIENVHWLPFDGTDQYGVDQYEKRDIKEYFWFG
HHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCC
TDDLGRDLWTRTWEGTRVSLYIALLAAAIDLVIGVAYGGISAFYGGRVDNIMQRIMEIIN
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GIPYLIIVILMVIIMGSGIWSITLAMAITGWIGMSRIVRGQILKLKNQEYVLASRTLGAT
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
NTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGSLVNDGYKSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
QTYPHMMFIPAVVISILILAFNLMADGLRDALDPKMRK
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMKDVQKLSPDLFQQANQNNVDNEVIARPSLTFWQDVRRRLFQHKGAMLGLVLLVIIALL
CCCHHHHCCHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AIFGPMVSKHSYKEQDLGRAKLPPKIPVIENVHWLPFDGTDQYGVDQYEKRDIKEYFWFG
HHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCC
TDDLGRDLWTRTWEGTRVSLYIALLAAAIDLVIGVAYGGISAFYGGRVDNIMQRIMEIIN
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GIPYLIIVILMVIIMGSGIWSITLAMAITGWIGMSRIVRGQILKLKNQEYVLASRTLGAT
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
NTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGSLVNDGYKSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
QTYPHMMFIPAVVISILILAFNLMADGLRDALDPKMRK
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]