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The map label for this gene is dppB [H]

Identifier: 218235941

GI number: 218235941

Start: 182946

End: 183863

Strand: Direct

Name: dppB [H]

Synonym: BCB4264_A0210

Alternate gene names: 218235941

Gene position: 182946-183863 (Clockwise)

Preceding gene: 218233751

Following gene: 218235165

Centisome position: 3.38

GC content: 35.95

Gene sequence:

>918_bases
GTGTATGTAATTAAAAAATTATCGGTTATGGTGTTCACACTATGGGTTATTACGACAGTGACATTTCTAATTATGCATAT
TATTCCGGGGGATCCATTTTCATCAGATGCAAAAATCTTTCCTGAAGAAGTGATCCAAAACATGAGAGCGAGGTATCACC
TTGATGAACCGTTATGGAATCAATATATTGCTTATTTAGACGGTGTAGTTCATTTTGATTTTGGCGAATCTGTTCAATCA
ACCGGGCAAGGTGTATCAGAAATTATAACAACTGGCTTTGGTCCATCAGCAATTATTGGTCTACAAGCACTTGTTATTTC
ATTGTTGGTAGGAATTGCGGCAGGGACATTTGCTGCTCTATATCATGGGAGAGTAATTGACTATAGTGTGAGTTTGCTCG
CAATTCTAGGTATTTCTATTCCAAGTTTTATTTTAGCACCACTATTTATACAAGTATTCGCTATCCAATTTGAGCTTTTA
CCAGTAGCCTCTTGGGGAACATTCGAACATACAGTATTGCCATCCTTTGCATTAGCGTTAGGGCCAATCGCAGTTATTAC
AAGGTTTGTTCGTTCTAATATGATCGAAGTACTGCAGAGTGATTATATTAAGCTAGCAAGAGCAAAAGGCATACCAATTA
AGAAGATTATTATAAGACATGCTCTTCGAAATGCGATTGTTCCAGTACTTACATTTGTGGGACCGTTAATGGCTGGACTT
TTAACAGGGACTTTCGTTATTGAAAAAATCTTTTCAATTCCTGGCCTAGGAAAATATTTTGTAGATAGTATTTTTAACCG
AGATTATCCGGTGATTATGGGAACAACGATTTTTTATAGTGCATTATTAATTGCTTGTATTTTCATTACAGATATTATTC
ACCGTATTGTTGATCCACGTATTCGTTCTATTACGTAA

Upstream 100 bases:

>100_bases
TTAAGATCAAGGCTTTTTGTATTCTAAAAAGAGAAAAGGGAGTAATGGAAAAGTACATTCATAAAACAAAGTAAAATCAT
GTATTTAGGGGGTTATTGAA

Downstream 100 bases:

>100_bases
GGAGGGGGATGTTTAGATGGGGGCTTATGAAATTAATGACCAGTTATTAACAAATGAAGAGAAAAAAGAATTAACGATAA
ATAAAAATCAGCAAACGATT

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRARYHLDEPLWNQYIAYLDGVVHFDFGESVQS
TGQGVSEIITTGFGPSAIIGLQALVISLLVGIAAGTFAALYHGRVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELL
PVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIACIFITDIIHRIVDPRIRSIT

Sequences:

>Translated_305_residues
MYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRARYHLDEPLWNQYIAYLDGVVHFDFGESVQS
TGQGVSEIITTGFGPSAIIGLQALVISLLVGIAAGTFAALYHGRVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELL
PVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIACIFITDIIHRIVDPRIRSIT
>Mature_305_residues
MYVIKKLSVMVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVIQNMRARYHLDEPLWNQYIAYLDGVVHFDFGESVQS
TGQGVSEIITTGFGPSAIIGLQALVISLLVGIAAGTFAALYHGRVIDYSVSLLAILGISIPSFILAPLFIQVFAIQFELL
PVASWGTFEHTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGL
LTGTFVIEKIFSIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIACIFITDIIHRIVDPRIRSIT

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=303, Percent_Identity=39.9339933993399, Blast_Score=255, Evalue=3e-69,
Organism=Escherichia coli, GI1787053, Length=304, Percent_Identity=37.171052631579, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=34.6268656716418, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI1789888, Length=306, Percent_Identity=33.3333333333333, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=31.2302839116719, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1788504, Length=357, Percent_Identity=28.8515406162465, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.2051282051282, Blast_Score=121, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33705; Mature: 33705

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCC
>Mature Secondary Structure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HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]