BacMap

Definition	Bacillus cereus B4264, complete genome.
Accession	NC_011725
Length	5,419,036

Click here to switch to the map view.

The map label for this gene is ybbO [C]

Identifier: 218235695

GI number: 218235695

Start: 1688818

End: 1689528

Strand: Reverse

Name: ybbO [C]

Synonym: BCB4264_A1782

Alternate gene names: 218235695

Gene position: 1689528-1688818 (Counterclockwise)

Preceding gene: 218232060

Following gene: 218232517

Centisome position: 31.18

GC content: 31.36

Gene sequence:

>711_bases
ATGAAAAAATATGCTTTTATAACAGGTGCAAATAAAGGAATTGGATATGAACTTGTTCGTCAATTAGCAGAAAAAGATTA
TCACGTATTTTTAGGTGCTCGTAATGAACAACTTGGACAACAAGCAGTAGAATCTTTAAATGTTTCAAACGTTTCCTATA
TTCAAGTAGATATTTCAAATTCACAATCCATTCAAGAAGCAATAAAGAAAATTTACGAAATGACTGACCACTTACATTTA
TTAATTAATAACGCAGGCATAGCGCTAGACTTCAATACACTACCTAGTGAATTAAATATTGAAACTTTACGCCAAGGATT
TGAAGTTAATTTTTTTGGAACTTTCCAAATGATGCAAGCCTTTTTACCATTATTAAAGAATTCAAGCAACAGTAAAATAA
TAAATGTAACAACTGACATGGCCTCACTAACAATGTTTGCTAATGGTGAAACACATCCAATTAATACACTAGGATATAAT
TCTTCCAAAACAGCTATTAATGCTTTAACATTAGCTTTTAGTAAAGAATTTTCCACTAACGGTCCCGAAGTATTTGGGGT
AACTCCTGGTTTTACAACTACGGATCTTAATGGAAATTCCCCCGGTGGCCATACAACCACTGAAAGTGCTAAAATTATTA
TTAAATATGCATTAAGTGAAACAAACTATAATGGTAAAATACTTAACAAAGATGGCATTATACCTTGGTAA

Upstream 100 bases:

>100_bases
ATTCTATATTTATTTTTAAAAATTCCTCTTGACCTAAACTTAAGTTTAGGCTGTATCCTTTCCATTGTAACCTACTATAA
CACTACTGGAGGAATTCAAT

Downstream 100 bases:

>100_bases
TAAAAGGATGAATGATATGTATTATACAATTGGGCAAGTCGCCAAAATGCAACATTTAACTATTTCTCAAATACGTTATT
ACGATAAACAAGGACTGTTT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKKYAFITGANKGIGYELVRQLAEKDYHVFLGARNEQLGQQAVESLNVSNVSYIQVDISNSQSIQEAIKKIYEMTDHLHL
LINNAGIALDFNTLPSELNIETLRQGFEVNFFGTFQMMQAFLPLLKNSSNSKIINVTTDMASLTMFANGETHPINTLGYN
SSKTAINALTLAFSKEFSTNGPEVFGVTPGFTTTDLNGNSPGGHTTTESAKIIIKYALSETNYNGKILNKDGIIPW

Sequences:

>Translated_236_residues
MKKYAFITGANKGIGYELVRQLAEKDYHVFLGARNEQLGQQAVESLNVSNVSYIQVDISNSQSIQEAIKKIYEMTDHLHL
LINNAGIALDFNTLPSELNIETLRQGFEVNFFGTFQMMQAFLPLLKNSSNSKIINVTTDMASLTMFANGETHPINTLGYN
SSKTAINALTLAFSKEFSTNGPEVFGVTPGFTTTDLNGNSPGGHTTTESAKIIIKYALSETNYNGKILNKDGIIPW
>Mature_236_residues
MKKYAFITGANKGIGYELVRQLAEKDYHVFLGARNEQLGQQAVESLNVSNVSYIQVDISNSQSIQEAIKKIYEMTDHLHL
LINNAGIALDFNTLPSELNIETLRQGFEVNFFGTFQMMQAFLPLLKNSSNSKIINVTTDMASLTMFANGETHPINTLGYN
SSKTAINALTLAFSKEFSTNGPEVFGVTPGFTTTDLNGNSPGGHTTTESAKIIIKYALSETNYNGKILNKDGIIPW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4504503, Length=203, Percent_Identity=31.5270935960591, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI150247226, Length=198, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI7705421, Length=264, Percent_Identity=29.5454545454545, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI166795268, Length=206, Percent_Identity=29.126213592233, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI186928839, Length=244, Percent_Identity=26.6393442622951, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI19743808, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI225579078, Length=219, Percent_Identity=31.0502283105023, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7706318, Length=209, Percent_Identity=24.4019138755981, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4502599, Length=140, Percent_Identity=35, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI44680136, Length=206, Percent_Identity=26.2135922330097, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI44680133, Length=206, Percent_Identity=26.2135922330097, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI17738292, Length=206, Percent_Identity=26.2135922330097, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=25.8883248730964, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=25.8883248730964, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=25.8883248730964, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=25.8883248730964, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI193804850, Length=213, Percent_Identity=26.2910798122066, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1786701, Length=200, Percent_Identity=27, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=25.2577319587629, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082160, Length=206, Percent_Identity=26.6990291262136, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786812, Length=197, Percent_Identity=26.9035532994924, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367175, Length=206, Percent_Identity=28.6407766990291, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17558990, Length=249, Percent_Identity=25.7028112449799, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17558006, Length=238, Percent_Identity=28.9915966386555, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17542178, Length=232, Percent_Identity=32.3275862068966, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17559962, Length=210, Percent_Identity=29.0476190476191, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17541382, Length=248, Percent_Identity=28.2258064516129, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17559964, Length=210, Percent_Identity=28.0952380952381, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17532177, Length=212, Percent_Identity=28.7735849056604, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193207563, Length=234, Percent_Identity=24.7863247863248, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17505416, Length=230, Percent_Identity=30, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17558994, Length=244, Percent_Identity=23.3606557377049, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI72001658, Length=232, Percent_Identity=28.0172413793103, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17558992, Length=236, Percent_Identity=27.5423728813559, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558996, Length=253, Percent_Identity=24.901185770751, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532791, Length=138, Percent_Identity=29.7101449275362, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322227, Length=204, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=26.1083743842365, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=208, Percent_Identity=29.3269230769231, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640547, Length=250, Percent_Identity=26.4, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24643142, Length=198, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24586328, Length=140, Percent_Identity=33.5714285714286, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28573296, Length=207, Percent_Identity=28.0193236714976, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=206, Percent_Identity=28.1553398058252, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI20129347, Length=212, Percent_Identity=24.5283018867925, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24656154, Length=232, Percent_Identity=29.7413793103448, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19922628, Length=232, Percent_Identity=29.7413793103448, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19921754, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI22024069, Length=209, Percent_Identity=28.7081339712919, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161076371, Length=241, Percent_Identity=26.9709543568465, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45553409, Length=159, Percent_Identity=26.4150943396226, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24647948, Length=159, Percent_Identity=26.4150943396226, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45554248, Length=218, Percent_Identity=28.8990825688073, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24640117, Length=218, Percent_Identity=28.8990825688073, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647946, Length=159, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25957; Mature: 25957

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYAFITGANKGIGYELVRQLAEKDYHVFLGARNEQLGQQAVESLNVSNVSYIQVDISN
CCEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCC
SQSIQEAIKKIYEMTDHLHLLINNAGIALDFNTLPSELNIETLRQGFEVNFFGTFQMMQA
CHHHHHHHHHHHHHHHCEEEEEECCCEEEECCCCCCCCCHHHHHCCCEEEEEEHHHHHHH
FLPLLKNSSNSKIINVTTDMASLTMFANGETHPINTLGYNSSKTAINALTLAFSKEFSTN
HHHHHCCCCCCEEEEEEECCEEEEEEECCCCCCCEECCCCCCCHHHHHEEEEEECCCCCC
GPEVFGVTPGFTTTDLNGNSPGGHTTTESAKIIIKYALSETNYNGKILNKDGIIPW
CCEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCC
>Mature Secondary Structure
MKKYAFITGANKGIGYELVRQLAEKDYHVFLGARNEQLGQQAVESLNVSNVSYIQVDISN
CCEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCC
SQSIQEAIKKIYEMTDHLHLLINNAGIALDFNTLPSELNIETLRQGFEVNFFGTFQMMQA
CHHHHHHHHHHHHHHHCEEEEEECCCEEEECCCCCCCCCHHHHHCCCEEEEEEHHHHHHH
FLPLLKNSSNSKIINVTTDMASLTMFANGETHPINTLGYNSSKTAINALTLAFSKEFSTN
HHHHHCCCCCCEEEEEEECCEEEEEEECCCCCCCEECCCCCCCHHHHHEEEEEECCCCCC
GPEVFGVTPGFTTTDLNGNSPGGHTTTESAKIIIKYALSETNYNGKILNKDGIIPW
CCEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]