Click here to switch to the map view.

The map label for this gene is ysdA [H]

Identifier: 218235533

GI number: 218235533

Start: 3583546

End: 3583794

Strand: Reverse

Name: ysdA [H]

Synonym: BCB4264_A3668

Alternate gene names: 218235533

Gene position: 3583794-3583546 (Counterclockwise)

Preceding gene: 218232963

Following gene: 218233693

Centisome position: 66.13

GC content: 35.74

Gene sequence:

>249_bases
ATGAAATGGATTTATTTTATTATTATTAACGTTATAGCTTTTAGCCTTATGGGGCTTGATAAACGAAAAGCGAAGAAGAA
ACAGTGGAGAACGCCAGAAAGTACGCTGTTTTTATCAGCGGCAGCTGGGGGAGCAGTTGGAGCTTGGATCGGTATGTATA
TGTTTCATCATAAAACTCATAAAAAGAAATTTGTTTTCGGCATACCGTTACTTGTTGTAATAACGGTATGTTTATTATTC
GTTGTATGA

Upstream 100 bases:

>100_bases
GAACAACCAACTAAACTAGTGTGCTAAAAAGTGATCTTCAGTTGTTTCCATCGTTTTTTCATGTTACCATTAAGCGAATT
TTTCATAGGGAGAGAAAGCG

Downstream 100 bases:

>100_bases
GAAATGTCGAAAGAAATGCAGATTGATTATTGGTAAAGTGAGCATGTGAGACCGTATAATGGAGAAAAAATGAGAAGAGG
AGAAAAAGGAAGATGGGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MKWIYFIIINVIAFSLMGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYMFHHKTHKKKFVFGIPLLVVITVCLLF
VV

Sequences:

>Translated_82_residues
MKWIYFIIINVIAFSLMGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYMFHHKTHKKKFVFGIPLLVVITVCLLF
VV
>Mature_82_residues
MKWIYFIIINVIAFSLMGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYMFHHKTHKKKFVFGIPLLVVITVCLLF
VV

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010718 [H]

Pfam domain/function: PF06961 DUF1294 [H]

EC number: NA

Molecular weight: Translated: 9357; Mature: 9357

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWIYFIIINVIAFSLMGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYMFHHKTH
CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHC
KKKFVFGIPLLVVITVCLLFVV
CCHHHCCCHHHHHHHHHHHHHC
>Mature Secondary Structure
MKWIYFIIINVIAFSLMGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYMFHHKTH
CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHC
KKKFVFGIPLLVVITVCLLFVV
CCHHHCCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]