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The map label for this gene is yojE [H]

Identifier: 218233693

GI number: 218233693

Start: 3582512

End: 3583453

Strand: Reverse

Name: yojE [H]

Synonym: BCB4264_A3667

Alternate gene names: 218233693

Gene position: 3583453-3582512 (Counterclockwise)

Preceding gene: 218235533

Following gene: 218232000

Centisome position: 66.13

GC content: 36.31

Gene sequence:

>942_bases
ATGGGGAGTCAATCAGCAGAGCAAAAAAAAGGGATACTATACGCGGCTGGTGCTTACACGATGTGGGGAATCCTACCGAT
TTATTGGAAATGGGTTGAGGAAGTTCCAGCAGATGAAATATTAGCACACCGCATCGTTTGGGCGTTTGTTTTTATGTTAC
TCGTATTAGGTGTTACGAAGAGGTTTCGTCAGTTTATTGGGGAATTTGTGAATCTTTTTAAACGACCTAAATTATTAATG
TCATTAACAATAGCTTCAGTCTTGATTAGCGGAAACTGGTTTGTTTACATATGGGCCGTTAATCATAATCATGTTATTGA
AGCGAGTCTTGGCTATTATATTAATCCGCTTATTAGTATTTTACTTGGTACAGTCGTTTTAAAGGAAAAGTTAAACTTCT
GGCAATATGTTGCAGTTGGTTTAGCTGGAGTGGGGGTTATCATTTTAACAGTGCGTTTCGGATCTATTCCGTGGGTTTCT
CTTTCACTTGCCTTTTCATTTGGATTATACGGATTAACGAAAAAACTGTTAAACTATGATGCTACAATTGGACTTACGAT
GGAAACGATGTTAGTGACACCGCTTGCAATCATTTACCTTGTTATGACAGGCGCCCATGGTTTCGGCTCATTTGGATCTA
TTTCAATGTTATCGACATTATTATTAATAGGAGCGGGCATTGTTACAGCATTGCCACTTTTTTATTTTGCAAAAGGAGCC
CAACTTATTCCGCTTTATATGGTAGGTTTTTTACAATATATTGCACCAACAATTAGCTTAATTTTAGGTGTATTCGTATT
TGGTGAACATTTCACATCTACTCATATGATTGCATTTTTCTGTATATGGGTTGCATTATTTGTATTCTCGGTAGCGAAGA
CTAAGTTTTTAGTGCAGAAACAACCGAAATTTATAAAAAATAAATCAGCAAAAGTATCATAA

Upstream 100 bases:

>100_bases
TTGTATGAGAAATGTCGAAAGAAATGCAGATTGATTATTGGTAAAGTGAGCATGTGAGACCGTATAATGGAGAAAAAATG
AGAAGAGGAGAAAAAGGAAG

Downstream 100 bases:

>100_bases
TGCGTAGTATTTTCTACGCATTTTTCTTTATACTTATATTATATAGAATTTCCATTATAGTCAGTAAGGAGCTGAGAACA
TGGAAACAATTTTACATAAT

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MGSQSAEQKKGILYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLLVLGVTKRFRQFIGEFVNLFKRPKLLM
SLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGSIPWVS
LSLAFSFGLYGLTKKLLNYDATIGLTMETMLVTPLAIIYLVMTGAHGFGSFGSISMLSTLLLIGAGIVTALPLFYFAKGA
QLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFIKNKSAKVS

Sequences:

>Translated_313_residues
MGSQSAEQKKGILYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLLVLGVTKRFRQFIGEFVNLFKRPKLLM
SLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGSIPWVS
LSLAFSFGLYGLTKKLLNYDATIGLTMETMLVTPLAIIYLVMTGAHGFGSFGSISMLSTLLLIGAGIVTALPLFYFAKGA
QLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFIKNKSAKVS
>Mature_312_residues
GSQSAEQKKGILYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLLVLGVTKRFRQFIGEFVNLFKRPKLLMS
LTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGSIPWVSL
SLAFSFGLYGLTKKLLNYDATIGLTMETMLVTPLAIIYLVMTGAHGFGSFGSISMLSTLLLIGAGIVTALPLFYFAKGAQ
LIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFIKNKSAKVS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=286, Percent_Identity=41.958041958042, Blast_Score=230, Evalue=8e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34851; Mature: 34720

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00501 SPASE_I_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSQSAEQKKGILYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLLVLGVTK
CCCCCCHHHCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RFRQFIGEFVNLFKRPKLLMSLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISI
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECHHHHHHHHHHHH
LLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGSIPWVSLSLAFSFGLYGLTKKLLNYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
ATIGLTMETMLVTPLAIIYLVMTGAHGFGSFGSISMLSTLLLIGAGIVTALPLFYFAKGA
CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QPKFIKNKSAKVS
CCHHHCCCCCCCC
>Mature Secondary Structure 
GSQSAEQKKGILYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLLVLGVTK
CCCCCHHHCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RFRQFIGEFVNLFKRPKLLMSLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISI
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECHHHHHHHHHHHH
LLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGSIPWVSLSLAFSFGLYGLTKKLLNYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
ATIGLTMETMLVTPLAIIYLVMTGAHGFGSFGSISMLSTLLLIGAGIVTALPLFYFAKGA
CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QPKFIKNKSAKVS
CCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]