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The map label for this gene is yvoA [H]

Identifier: 218235367

GI number: 218235367

Start: 4068376

End: 4068963

Strand: Reverse

Name: yvoA [H]

Synonym: BCB4264_A4162

Alternate gene names: 218235367

Gene position: 4068963-4068376 (Counterclockwise)

Preceding gene: 218232087

Following gene: 218231037

Centisome position: 75.09

GC content: 39.8

Gene sequence:

>588_bases
ATGACAATCAGACAGGCGATTAATAATTTAGTGGAACAAGGCTATTTATATCGGAAGCGTGGAATTGGAACATTTGTCCA
ACTTCCGAAAGTGGAACAAAAATTGCAAGGAATGACGGGATTCACAGAAGACATGATTTCTCGTGGGATGAACCCAAGTA
GTCAATTACTTAGTTTCCGCCTAGTTCCAGCTACTGCTAAAATAGCAGACCGGTTGAGAATACAGGAGGGGGAATCGGTT
TATGAAGTGAGGCGTATTCGCTTAGCTGATGATGAACCGATTGCTTTTGAGACGACATATTTGTCGCCAGCTCTTGTAAA
AGATATTAACGAAGAGATATTGCAACAATCTTTATATGAACATTTAGAGAAAAAACTGGGCTTTAAACTTGTTAGCGCTA
CTCAGTCAATTGAAGCTTCCGTTGCGACGGAAAATGAAGCTGAACATCTGCATATTCCTAAAAAGGCGCCTGTACTTGTA
ATGCGTCAATGGTCATATTCAGAAGGTGAGGTACCGCTAGAGTACGTGAAATGTATTTATCGTGGAGATCGTTATAAATT
TATTACGAATATCGCACGTAACAAATAG

Upstream 100 bases:

>100_bases
TCAAGAGTGGGTGAAACAGCTAATTGAGGACGGCGAATGGAAGCCGGGAGATAAAATCCCATCTGAGAATGAACTTTGTG
ATAAGTTCGAAGTGAGTCGA

Downstream 100 bases:

>100_bases
TATATTTCAGTTTGTGAAGTACAGTGGAATTGAAAATGGTTAACATGTAAAGAAATAAAAATACGACTCATCCTTATAAG
GAATGAGTCGTATTTTTATT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTIRQAINNLVEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESV
YEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVSATQSIEASVATENEAEHLHIPKKAPVLV
MRQWSYSEGEVPLEYVKCIYRGDRYKFITNIARNK

Sequences:

>Translated_195_residues
MTIRQAINNLVEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESV
YEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVSATQSIEASVATENEAEHLHIPKKAPVLV
MRQWSYSEGEVPLEYVKCIYRGDRYKFITNIARNK
>Mature_194_residues
TIRQAINNLVEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESVY
EVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVSATQSIEASVATENEAEHLHIPKKAPVLVM
RQWSYSEGEVPLEYVKCIYRGDRYKFITNIARNK

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=187, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1790118, Length=175, Percent_Identity=31.4285714285714, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1786950, Length=196, Percent_Identity=30.6122448979592, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1788418, Length=190, Percent_Identity=26.8421052631579, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI87082252, Length=195, Percent_Identity=26.1538461538462, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 22395; Mature: 22264

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRQAINNLVEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFR
CCHHHHHHHHHHHCHHHHHCCCCHHHCCHHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEE
LVPATAKIADRLRIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYE
ECCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHH
HLEKKLGFKLVSATQSIEASVATENEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIY
HHHHHHCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHH
RGDRYKFITNIARNK
CCCHHHHHHHHHCCC
>Mature Secondary Structure 
TIRQAINNLVEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFR
CHHHHHHHHHHHCHHHHHCCCCHHHCCHHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEE
LVPATAKIADRLRIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYE
ECCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHH
HLEKKLGFKLVSATQSIEASVATENEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIY
HHHHHHCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHH
RGDRYKFITNIARNK
CCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]