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The map label for this gene is yhfN [H]

Identifier: 218235019

GI number: 218235019

Start: 1145426

End: 1146694

Strand: Direct

Name: yhfN [H]

Synonym: BCB4264_A1177

Alternate gene names: 218235019

Gene position: 1145426-1146694 (Clockwise)

Preceding gene: 218231703

Following gene: 218231652

Centisome position: 21.14

GC content: 35.62

Gene sequence:

>1269_bases
GTGAGGAAGGTTATCGGTTGGTCGCTTTTTTTGTACGTTGGATTTGCGTTACTTATATATTGGTATTTATTTGGATGGAA
TCATGAACTTATTCCGGACATGTATAAGGGAACGAGTGCAGATCCAGAAACGTTTATGAGTACGAGAGAGCTTACGCTAA
GCCAAGATTATTCGCGCGTGAAAAATTTACTATACTTTTTAGCGACGCCTCTTGAATGGATTATTTTATTATTTGTACTT
GTGCTAGGTATTTCAAGAAAGTTTGAGAAATGGTCGAAGGAAACGACTAAAATAAGTGTTTTGCAAGTTGCGATTTATTT
CTTTTATTTATCATTACTGACAACAGTGATTGCCTTACCGATGCAATGGATTGGCCGGAAAGTGTCCGTTGATTACGGCA
TTTCAACACAAAGTACACAAAGCTGGATAAAAGATCATGTTATCGGTTTTTGGGAAAGTTATGCGACTATGTTAATTGTA
GTGACCGTTCTATTATGGCTTATCCGTAAATTTCCGAAGAGATGGTGGCTAGCAGGGTGGGCGCTCTCTGTTCCATTTAC
AATCTTTTTAACATTCATACAGCCTGTCGTTATTGACCCACTGTATAACGACTTTTCGACGCTGAAAAATAAAGAATTAG
AAACGAAAATTTTAGCGATAGCAGACAAAGCGGATATTCCTGCTAAACACGTATATGAAGTAAATATGTCAGAAAAAACG
AATGCATTAAATGCTTACGTAACAGGAATTGGCCCTAACGCCCGTATTGTAATGTGGGATACAACGCTTAAGCAGTTAAA
AGATAAAGAGATTTTATTTATCATGGCCCATGAAATGGGGCATTATGTTATGAAGCATATATATTTTGGCGTTGCAAGTT
ATGTATTGCTATCGTTTATAGGTATGTTTTTAATTAGTCGTATTATAAATATGTGTATTCGCAAATGGGGAGATACATTG
CAAATTTCAAAAGTGGCATGTTTCTCCATTTTACCTTTATTTTTCTTAATTTCTTCTATACTCTCATTTGCAGTACAACC
AGCAACAAACTATGTTTCACGTATAGAAGAAAGAGCGGCAGATCAATATGCTTTAAATATGACGAAGGACGGAAAATCTG
GTGTGAAAACTTTTCAATATTTATCAAAAACAAGTTTAAGCCAAGTGAATCCGCCTGCGTTAGTGAAATTTTTCTTATAC
ACGCACCCACCAATTTTTGAAAGAATTCATACGTTTGAACAATATGAGAAACAAAGAAAAAAGGAGTAG

Upstream 100 bases:

>100_bases
AATAAAAAGATCCAGAGCAATTCACATAATAAGCTTGTTCTAATTTAGCGTGTACGAACTTACAATAATAATAGACAGGC
AGCATAGAGGAGGGAATAGC

Downstream 100 bases:

>100_bases
CTATTATGCTACTTTTTTTTATAGAGATATAAGTTTCATATTGGGAATATTTATCATTGCTTTTTATTGCGATTTTGTAA
ATAATAAGCTATAAAATTCT

Product: peptidase, M48 family

Products: NA

Alternate protein names: PSP23 [H]

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MRKVIGWSLFLYVGFALLIYWYLFGWNHELIPDMYKGTSADPETFMSTRELTLSQDYSRVKNLLYFLATPLEWIILLFVL
VLGISRKFEKWSKETTKISVLQVAIYFFYLSLLTTVIALPMQWIGRKVSVDYGISTQSTQSWIKDHVIGFWESYATMLIV
VTVLLWLIRKFPKRWWLAGWALSVPFTIFLTFIQPVVIDPLYNDFSTLKNKELETKILAIADKADIPAKHVYEVNMSEKT
NALNAYVTGIGPNARIVMWDTTLKQLKDKEILFIMAHEMGHYVMKHIYFGVASYVLLSFIGMFLISRIINMCIRKWGDTL
QISKVACFSILPLFFLISSILSFAVQPATNYVSRIEERAADQYALNMTKDGKSGVKTFQYLSKTSLSQVNPPALVKFFLY
THPPIFERIHTFEQYEKQRKKE

Sequences:

>Translated_422_residues
MRKVIGWSLFLYVGFALLIYWYLFGWNHELIPDMYKGTSADPETFMSTRELTLSQDYSRVKNLLYFLATPLEWIILLFVL
VLGISRKFEKWSKETTKISVLQVAIYFFYLSLLTTVIALPMQWIGRKVSVDYGISTQSTQSWIKDHVIGFWESYATMLIV
VTVLLWLIRKFPKRWWLAGWALSVPFTIFLTFIQPVVIDPLYNDFSTLKNKELETKILAIADKADIPAKHVYEVNMSEKT
NALNAYVTGIGPNARIVMWDTTLKQLKDKEILFIMAHEMGHYVMKHIYFGVASYVLLSFIGMFLISRIINMCIRKWGDTL
QISKVACFSILPLFFLISSILSFAVQPATNYVSRIEERAADQYALNMTKDGKSGVKTFQYLSKTSLSQVNPPALVKFFLY
THPPIFERIHTFEQYEKQRKKE
>Mature_422_residues
MRKVIGWSLFLYVGFALLIYWYLFGWNHELIPDMYKGTSADPETFMSTRELTLSQDYSRVKNLLYFLATPLEWIILLFVL
VLGISRKFEKWSKETTKISVLQVAIYFFYLSLLTTVIALPMQWIGRKVSVDYGISTQSTQSWIKDHVIGFWESYATMLIV
VTVLLWLIRKFPKRWWLAGWALSVPFTIFLTFIQPVVIDPLYNDFSTLKNKELETKILAIADKADIPAKHVYEVNMSEKT
NALNAYVTGIGPNARIVMWDTTLKQLKDKEILFIMAHEMGHYVMKHIYFGVASYVLLSFIGMFLISRIINMCIRKWGDTL
QISKVACFSILPLFFLISSILSFAVQPATNYVSRIEERAADQYALNMTKDGKSGVKTFQYLSKTSLSQVNPPALVKFFLY
THPPIFERIHTFEQYEKQRKKE

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M48B family [H]

Homologues:

Organism=Homo sapiens, GI18379366, Length=430, Percent_Identity=21.8604651162791, Blast_Score=90, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17505484, Length=438, Percent_Identity=21.4611872146119, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322577, Length=310, Percent_Identity=26.4516129032258, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI19922414, Length=173, Percent_Identity=21.9653179190751, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 49061; Mature: 49061

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00142 ZINC_PROTEASE ; PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVIGWSLFLYVGFALLIYWYLFGWNHELIPDMYKGTSADPETFMSTRELTLSQDYSRV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KNLLYFLATPLEWIILLFVLVLGISRKFEKWSKETTKISVLQVAIYFFYLSLLTTVIALP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQWIGRKVSVDYGISTQSTQSWIKDHVIGFWESYATMLIVVTVLLWLIRKFPKRWWLAGW
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSVPFTIFLTFIQPVVIDPLYNDFSTLKNKELETKILAIADKADIPAKHVYEVNMSEKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCCCHHHEEEECCCCCC
NALNAYVTGIGPNARIVMWDTTLKQLKDKEILFIMAHEMGHYVMKHIYFGVASYVLLSFI
CCHHEEEEEECCCCEEEEECCHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
GMFLISRIINMCIRKWGDTLQISKVACFSILPLFFLISSILSFAVQPATNYVSRIEERAA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQYALNMTKDGKSGVKTFQYLSKTSLSQVNPPALVKFFLYTHPPIFERIHTFEQYEKQRK
HHHEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
KE
CC
>Mature Secondary Structure
MRKVIGWSLFLYVGFALLIYWYLFGWNHELIPDMYKGTSADPETFMSTRELTLSQDYSRV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KNLLYFLATPLEWIILLFVLVLGISRKFEKWSKETTKISVLQVAIYFFYLSLLTTVIALP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQWIGRKVSVDYGISTQSTQSWIKDHVIGFWESYATMLIVVTVLLWLIRKFPKRWWLAGW
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSVPFTIFLTFIQPVVIDPLYNDFSTLKNKELETKILAIADKADIPAKHVYEVNMSEKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCCCHHHEEEECCCCCC
NALNAYVTGIGPNARIVMWDTTLKQLKDKEILFIMAHEMGHYVMKHIYFGVASYVLLSFI
CCHHEEEEEECCCCEEEEECCHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
GMFLISRIINMCIRKWGDTLQISKVACFSILPLFFLISSILSFAVQPATNYVSRIEERAA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQYALNMTKDGKSGVKTFQYLSKTSLSQVNPPALVKFFLYTHPPIFERIHTFEQYEKQRK
HHHEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
KE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 3145906 [H]