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The map label for this gene is yddQ [C]

Identifier: 218234942

GI number: 218234942

Start: 2151180

End: 2152199

Strand: Reverse

Name: yddQ [C]

Synonym: BCB4264_A2251

Alternate gene names: 218234942

Gene position: 2152199-2151180 (Counterclockwise)

Preceding gene: 218231255

Following gene: 218234173

Centisome position: 39.72

GC content: 33.33

Gene sequence:

>1020_bases
ATGAAATCTATTTGGAAATCAAAACGCTTTTTAATCGGCTTTACTTATCTATTCATACTTATTTCAGCTAGTTTTATTTA
TAGTTGGTTCTTTAAAGATAACATCCCAAAACCTCCTCAGTTACTTTACAATGACAATAACGAATTACTTGGAAAGGCCC
CCTTTCCACCATCGTTAATTCCACCTTTTGGATCTGATCGTTTTGGAGAGTCTGTTTTCTTACAAATTGTAGAAGGAGCA
AAATTCACTATTTTATTAGCCATGGCAATTAGCTTCTTTCGAATTTTATGCGGAACATGTATAGGAATCCTCTTAAGTTT
ATTTGCTCCAAAACTCAAAAGATTTTTCCAGTCATGCTCAGAAGTTTTTTATTATATTCCAACTCTATTTATCGCATTCA
TACTCATCACGCCCGTTAATATTATAATCACATCAAATGCTGATGGGGTAGATCCAAATATTTCATTTACGTTTTATCAA
GTACTCGTACTTATTTTCGTCGCTCTGCCTACACTTTCTTTATACATATCCTCAGAGGTTGATGAATTTATGAAACAAGA
TTACATCTTAAGTTCACAATTACTGGGGGCTAGTCGTTTTCATATTATTAAAAAACACTTACGAGTCTTATTACTTGACC
GCTTATTTGTATTATTTATGGAACATATCGTCCAAACACTCATACTCGTTATCCATTTGGCGCTGCTTAACATTGTAATT
GGCGGCATACAAATGCGTGAACTCTATGACGGAGTGCTCAAACCTGTTTCTCTATCTAATGATTGGGCAGGTCTTATTGG
ATTAAATCGTAATGAAATGAATCTTTCATGGTGGATTATTTTTTATACTCTCGCTTCATTCTTTATTACGATTCTATTTA
TTAAGCTTATGACCATCGGGATTCAAGATGCACTGAAAGCAAGAGATTCGCAAATTGTAGCAATTCAAAACGTTCCAGAT
CATAAAAAATTTGTTAAACATAAAGATTCCTTTTCGTTTGCCAATAAAGTAAACCTTTAA

Upstream 100 bases:

>100_bases
TTATCATACTTGTTATGATTATTTTACCATTTTATGCTATTTTCCAAATAGTCTCATTCATGATGAATAGATGGAAAAAG
CAATTGAAAGGAGTATCATT

Downstream 100 bases:

>100_bases
TCATTTCTCATTAATCAAGTATTAATTGGCATCGATATTAGTAGAAAATAAAGAAGATGATCCCTATTAAATGGTCTTAC
CCCTGTCAAGTAGACAGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Oligopeptide Transport System Permease; Peptide ABC Transporter Permease; Oligopeptide Permease OppC; ABC Transporter Permease; Dipeptide Transport System Permease; Oligopeptide Transport System Permease Protein OppC; ABC-Type Transport System Permease Protein; Oligopeptide Transport System Permease Protein-Like Protein; Oligopeptide Transport System Permease Protein AppC; ABC-Type Transport System Permease Component

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIVEGA
KFTILLAMAISFFRILCGTCIGILLSLFAPKLKRFFQSCSEVFYYIPTLFIAFILITPVNIIITSNADGVDPNISFTFYQ
VLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTIGIQDALKARDSQIVAIQNVPD
HKKFVKHKDSFSFANKVNL

Sequences:

>Translated_339_residues
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIVEGA
KFTILLAMAISFFRILCGTCIGILLSLFAPKLKRFFQSCSEVFYYIPTLFIAFILITPVNIIITSNADGVDPNISFTFYQ
VLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTIGIQDALKARDSQIVAIQNVPD
HKKFVKHKDSFSFANKVNL
>Mature_339_residues
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIVEGA
KFTILLAMAISFFRILCGTCIGILLSLFAPKLKRFFQSCSEVFYYIPTLFIAFILITPVNIIITSNADGVDPNISFTFYQ
VLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTIGIQDALKARDSQIVAIQNVPD
HKKFVKHKDSFSFANKVNL

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yddopqrs. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787760, Length=276, Percent_Identity=21.7391304347826, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38761; Mature: 38761

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCC
PPFGSDRFGESVFLQIVEGAKFTILLAMAISFFRILCGTCIGILLSLFAPKLKRFFQSCS
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVFYYIPTLFIAFILITPVNIIITSNADGVDPNISFTFYQVLVLIFVALPTLSLYISSEV
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTIG
CCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQDALKARDSQIVAIQNVPDHKKFVKHKDSFSFANKVNL
HHHHHHCCCCCEEEECCCCCHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCC
PPFGSDRFGESVFLQIVEGAKFTILLAMAISFFRILCGTCIGILLSLFAPKLKRFFQSCS
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVFYYIPTLFIAFILITPVNIIITSNADGVDPNISFTFYQVLVLIFVALPTLSLYISSEV
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTIG
CCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQDALKARDSQIVAIQNVPDHKKFVKHKDSFSFANKVNL
HHHHHHCCCCCEEEECCCCCHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA