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The map label for this gene is ybfP [H]

Identifier: 218234759

GI number: 218234759

Start: 2930016

End: 2930906

Strand: Reverse

Name: ybfP [H]

Synonym: BCB4264_A3053

Alternate gene names: 218234759

Gene position: 2930906-2930016 (Counterclockwise)

Preceding gene: 218232501

Following gene: 218235436

Centisome position: 54.09

GC content: 33.78

Gene sequence:

>891_bases
ATGGAGAGTAAACAAAGTAGAAATGAATACTTACGACGCATTTATAAAGTGCAAGATTATATAGAATCAAACATAAATGA
TTCACTTTCAATTGAAGAGTTAGCGGATGTAGCAGGATTTTCAAAGTTTCATTTTCATCGGATTTTTAAGGGAATAGTAA
ACGAGTCATTATCACGGTATGTAAACCGATTGAAGTTAGAAAGGGCCACACATCTACTTACATATCGGACAGATATGACG
ATTACAGATATTGCGTATCACTTCGGATTCACAGATTCAGCAGTTTTCTCCCGTACATTTAAAAATTATTACGGAGTAAG
TCCGTCTCAATATCGAAACTATAATAGCAAGAATTGCAAAGACGTAAGAAGAACTTCTCAATACAATGAATGTAAGAAGG
TTCGAGGAAATGTTGAAATTGTAACAGCGGACGATATAAACGTCGCATACATAAGACATATCGGTACATATGGAGAGTTA
ACTATAGCTTTTCCAAAAATGATAGAAAAACTATTTCATTACGCAGCTAAGCAAAACTATCATGTATTTGATGATATTAA
AGTATTAACCATTTACCACGATCATCATGAATTTACTGAGGACTATCATTTAAGAACAAGTTTATGTATAACAATTCCGG
AGGCGTCCGCAATAGAAACGAACGACATAGGAATAATGGTAATACCTTCAGGCAAGTATGTAGTAGGACATTTTGAAATA
TTTCAAAATGAATATAAAGGAGCATGGGATTTCTTATACGGTGAATGGCTGCCAAATAGCGGATATAAACCGAGAGACTC
GTATCCTTTTGAAGTATATAGAAATGATCCAAAGCAGCACCCGAAAAATAAACATATAGTTGATATATATGTACCTATCG
AACCTTTTTAA

Upstream 100 bases:

>100_bases
AAATTATGATGGGAATGGCGGGAGTAGAGTTTTATTTTTGAAACATGTGTAAAAGTAGGCTAGCACAAAGTTAGCCTTTT
TGTTGTGAGGAGCTAAAAGT

Downstream 100 bases:

>100_bases
TTATAGGTTAAAGGGGAAGGAATAATGAAAACTGCTGAAAAGTTAGATCAAATTATACAAGAAGAATATAAAAATATGAA
TGGCATGTTAGTAGTGCAGA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MESKQSRNEYLRRIYKVQDYIESNINDSLSIEELADVAGFSKFHFHRIFKGIVNESLSRYVNRLKLERATHLLTYRTDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNYNSKNCKDVRRTSQYNECKKVRGNVEIVTADDINVAYIRHIGTYGEL
TIAFPKMIEKLFHYAAKQNYHVFDDIKVLTIYHDHHEFTEDYHLRTSLCITIPEASAIETNDIGIMVIPSGKYVVGHFEI
FQNEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKNKHIVDIYVPIEPF

Sequences:

>Translated_296_residues
MESKQSRNEYLRRIYKVQDYIESNINDSLSIEELADVAGFSKFHFHRIFKGIVNESLSRYVNRLKLERATHLLTYRTDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNYNSKNCKDVRRTSQYNECKKVRGNVEIVTADDINVAYIRHIGTYGEL
TIAFPKMIEKLFHYAAKQNYHVFDDIKVLTIYHDHHEFTEDYHLRTSLCITIPEASAIETNDIGIMVIPSGKYVVGHFEI
FQNEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKNKHIVDIYVPIEPF
>Mature_296_residues
MESKQSRNEYLRRIYKVQDYIESNINDSLSIEELADVAGFSKFHFHRIFKGIVNESLSRYVNRLKLERATHLLTYRTDMT
ITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNYNSKNCKDVRRTSQYNECKKVRGNVEIVTADDINVAYIRHIGTYGEL
TIAFPKMIEKLFHYAAKQNYHVFDDIKVLTIYHDHHEFTEDYHLRTSLCITIPEASAIETNDIGIMVIPSGKYVVGHFEI
FQNEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKNKHIVDIYVPIEPF

Specific function: Probable transcriptional regulator [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=102, Percent_Identity=34.3137254901961, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34916; Mature: 34916

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESKQSRNEYLRRIYKVQDYIESNINDSLSIEELADVAGFSKFHFHRIFKGIVNESLSRY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VNRLKLERATHLLTYRTDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNYNSKNCK
HHHHHHHHHHHEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRTSQYNECKKVRGNVEIVTADDINVAYIRHIGTYGELTIAFPKMIEKLFHYAAKQNY
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHCCCC
HVFDDIKVLTIYHDHHEFTEDYHLRTSLCITIPEASAIETNDIGIMVIPSGKYVVGHFEI
EEECCEEEEEEEECCHHHCCCCEEEEEEEEEECCCCCEEECCEEEEEECCCCEEEEHHHH
FQNEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKNKHIVDIYVPIEPF
HHHHCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MESKQSRNEYLRRIYKVQDYIESNINDSLSIEELADVAGFSKFHFHRIFKGIVNESLSRY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VNRLKLERATHLLTYRTDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNYNSKNCK
HHHHHHHHHHHEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRTSQYNECKKVRGNVEIVTADDINVAYIRHIGTYGELTIAFPKMIEKLFHYAAKQNY
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHCCCC
HVFDDIKVLTIYHDHHEFTEDYHLRTSLCITIPEASAIETNDIGIMVIPSGKYVVGHFEI
EEECCEEEEEEEECCHHHCCCCEEEEEEEEEECCCCCEEECCEEEEEECCCCEEEEHHHH
FQNEYKGAWDFLYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKNKHIVDIYVPIEPF
HHHHCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]