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The map label for this gene is rbsR [H]

Identifier: 218234322

GI number: 218234322

Start: 686096

End: 687067

Strand: Direct

Name: rbsR [H]

Synonym: BCB4264_A0696

Alternate gene names: 218234322

Gene position: 686096-687067 (Clockwise)

Preceding gene: 218234907

Following gene: 218233801

Centisome position: 12.66

GC content: 36.32

Gene sequence:

>972_bases
ATGAGTACGATTAAAGACGTTGCAAAATTAGCGGAAGTATCTGTTGCGACCGTTTCCAGGGTTCTAAATAAAAATGGATA
TGTTCACGAAGATACATTAAAAAAGGTAGAACGTGCAATTGAGATGTTAGATTATAAGCCTAGTACAGTAGCGCGTTCAC
TGTATAATAAAAAGTCTCGTTTAATTGGCTTAGTTGTTCCAAATATCGTGAATCCATTCTTTCCGGAAGTTGCACGTGCC
GTAGAAGATGTAGCACATAAACAAGGTTACACAGTTGTCCTTTGTAACTCTGATGAAAGTTTAGAAAAAGAGAAACAATA
TATTGATGTACTTAGACAAAATAATGTAGATGGATTTATTGTAGCAACAAATCCACAAAATAGTGTTAATTACATGAATT
TATCTGTTCCGGTTGTTGCGATTGACCGTATGTTTAATGAGCGTATTCCTACTGTATATGCAGATAACTATGCAGGAAGT
CAGGCTGCGACAAAGTTGTTACTAGATAAAGGATGTAAACATATTGCACATATTCGCGGTCCACGTGATGTGAGTACTGC
AAATGAACGCTTTGAAGGTTTTGTAGACGTTATTACGCAAAATAATCTTTCGTATATGATTGCAGAGAGTACGTTTGATC
CAGCAAATAGTGAGCGTGTAGCGATGGAATTATTAGAAGAATACCCGCATATTGATGGTATTGTTGCTGGGAATGATTTA
ATTGCGATCGGTATTGTAAAGGCGGCACTTCAAAAGGGGATTGCCATTCCAGATGATTTACAAATTATCGGATTTGATGG
CATTTCTTTAACGGAAATGATGTATCCCTCTATTACGACAGTTGCACAACCGATATATGAAATGGGGAAAATTGCAACAG
AGTTGTTGTTAGAGCAAATGGAAGGAAATACATTAGAAGAGAAACATTATCGTTTGCCGATTGAAATTATAGAACGAAAT
ACAACGAAGTAA

Upstream 100 bases:

>100_bases
ATAACCTTAAAAGCTTTTTAGTGAGAAATGATTGACGTATTTTTAGAAATACGTTATATTATTTTCTGTAAACGGTTACA
TGAAATGAGGAGAAAAGAGA

Downstream 100 bases:

>100_bases
GGAGATGAAACAGATGCCAAATATTGCAGTAGTAGGAAGCATTTCAATGGACTTAGTGGCTGTTTCAAAAAAACGCCCGA
AAGCAGGAGAAACAGTAATT

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSTIKDVAKLAEVSVATVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEVARA
VEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPQNSVNYMNLSVPVVAIDRMFNERIPTVYADNYAGS
QAATKLLLDKGCKHIAHIRGPRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAMELLEEYPHIDGIVAGNDL
IAIGIVKAALQKGIAIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKIATELLLEQMEGNTLEEKHYRLPIEIIERN
TTK

Sequences:

>Translated_323_residues
MSTIKDVAKLAEVSVATVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEVARA
VEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPQNSVNYMNLSVPVVAIDRMFNERIPTVYADNYAGS
QAATKLLLDKGCKHIAHIRGPRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAMELLEEYPHIDGIVAGNDL
IAIGIVKAALQKGIAIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKIATELLLEQMEGNTLEEKHYRLPIEIIERN
TTK
>Mature_322_residues
STIKDVAKLAEVSVATVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEVARAV
EDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPQNSVNYMNLSVPVVAIDRMFNERIPTVYADNYAGSQ
AATKLLLDKGCKHIAHIRGPRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAMELLEEYPHIDGIVAGNDLI
AIGIVKAALQKGIAIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKIATELLLEQMEGNTLEEKHYRLPIEIIERNT
TK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=329, Percent_Identity=34.0425531914894, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1790369, Length=329, Percent_Identity=31.6109422492401, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1787948, Length=332, Percent_Identity=30.7228915662651, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788474, Length=312, Percent_Identity=34.9358974358974, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789068, Length=300, Percent_Identity=32.3333333333333, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789202, Length=297, Percent_Identity=31.3131313131313, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787580, Length=313, Percent_Identity=29.3929712460064, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790715, Length=329, Percent_Identity=25.2279635258359, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI48994940, Length=312, Percent_Identity=27.2435897435897, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1786540, Length=326, Percent_Identity=26.3803680981595, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787906, Length=335, Percent_Identity=27.1641791044776, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786268, Length=307, Percent_Identity=23.1270358306189, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1790689, Length=308, Percent_Identity=23.7012987012987, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790192, Length=271, Percent_Identity=26.1992619926199, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789456, Length=352, Percent_Identity=23.0113636363636, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35991; Mature: 35860

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIKDVAKLAEVSVATVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSR
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLVVPNIVNPFFPEVARAVEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFI
EEEEECHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
VATNPQNSVNYMNLSVPVVAIDRMFNERIPTVYADNYAGSQAATKLLLDKGCKHIAHIRG
EEECCCCCCEEEEECCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAMELLEEYPHIDGIVAGNDL
CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCC
IAIGIVKAALQKGIAIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKIATELLLEQM
HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EGNTLEEKHYRLPIEIIERNTTK
CCCCCCHHHCCCCHHEECCCCCC
>Mature Secondary Structure 
STIKDVAKLAEVSVATVSRVLNKNGYVHEDTLKKVERAIEMLDYKPSTVARSLYNKKSR
CHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLVVPNIVNPFFPEVARAVEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFI
EEEEECHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
VATNPQNSVNYMNLSVPVVAIDRMFNERIPTVYADNYAGSQAATKLLLDKGCKHIAHIRG
EEECCCCCCEEEEECCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PRDVSTANERFEGFVDVITQNNLSYMIAESTFDPANSERVAMELLEEYPHIDGIVAGNDL
CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCC
IAIGIVKAALQKGIAIPDDLQIIGFDGISLTEMMYPSITTVAQPIYEMGKIATELLLEQM
HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EGNTLEEKHYRLPIEIIERNTTK
CCCCCCHHHCCCCHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]