Click here to switch to the map view.

The map label for this gene is ygeA [H]

Identifier: 218234088

GI number: 218234088

Start: 2574067

End: 2574747

Strand: Reverse

Name: ygeA [H]

Synonym: BCB4264_A2663

Alternate gene names: 218234088

Gene position: 2574747-2574067 (Counterclockwise)

Preceding gene: 218232135

Following gene: 218233564

Centisome position: 47.51

GC content: 32.16

Gene sequence:

>681_bases
ATGAAAGTTATTGGTTTGATTGGAGGATTAAGTTGGGAATCTACATCATTATACTATAAACATATTAATACACTTACACT
CTCTCAATACGATCAAAATGCGAAGCTAATTTTATATAGTATGGACTTTGGTGAAGTAACTACTTTATTACAAAACTATC
AATATGAAGAAGTGAAAAATGAACTAGTTACAGTTGCAAAGAAAGTTGAAAAATCTGGGGCTGAATGTTTATTAATGTGT
TCAAATACTGTACATCTATTTGCCGAGGAGGTAGAACAAGCAATATCTATCCCGCTTCTTCACATTGGTGATGTAAGTGC
TAAAGAAATGGTAGAACAGAATATAAAACGTATCGGACTATTAGGAACAAAACAAACGATGGAGCAAGATTTCTATAAAT
CACGATTAGCGAAATATAACATTGAGACAATTATCCCAAATGACGAGGAAAGAACTTTTATCCACCATGTCATATTAGAT
GAATTAAGTAGAGGGATCATTTCAGAAACATCTAAAAAAAGGTTATTACAAATTACAAAATCATTAATTCAAAACGGCGC
TGAAGGTATATTATTAGGCTGCACTGAAATACCTTTACTCATCTCCCAAAATGATCTTACTGTTCCGGTTTTTGATACTG
CTTTTTTACATGCAAATACTGCTGTACAATTTGCTGGATAA

Upstream 100 bases:

>100_bases
TTACTATTTTTATTTTTTATTAAATAGCGCATTTAAATCATTGTATTCTTATCGGAATTGTGAAATAATGAATTCAAAAT
CGTTTCGGGAGGAATGCATT

Downstream 100 bases:

>100_bases
GAATACACAAGCATAAAGGTGAGAACCTCTATGCTTGTATACAGTTACGACTATTTATCCCGCTATTTGCAGGCAGTAAA
GCCCCACCAATTAAAGTTTT

Product: aspartate racemase family protein

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLILYSMDFGEVTTLLQNYQYEEVKNELVTVAKKVEKSGAECLLMC
SNTVHLFAEEVEQAISIPLLHIGDVSAKEMVEQNIKRIGLLGTKQTMEQDFYKSRLAKYNIETIIPNDEERTFIHHVILD
ELSRGIISETSKKRLLQITKSLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG

Sequences:

>Translated_226_residues
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLILYSMDFGEVTTLLQNYQYEEVKNELVTVAKKVEKSGAECLLMC
SNTVHLFAEEVEQAISIPLLHIGDVSAKEMVEQNIKRIGLLGTKQTMEQDFYKSRLAKYNIETIIPNDEERTFIHHVILD
ELSRGIISETSKKRLLQITKSLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG
>Mature_226_residues
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLILYSMDFGEVTTLLQNYQYEEVKNELVTVAKKVEKSGAECLLMC
SNTVHLFAEEVEQAISIPLLHIGDVSAKEMVEQNIKRIGLLGTKQTMEQDFYKSRLAKYNIETIIPNDEERTFIHHVILD
ELSRGIISETSKKRLLQITKSLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=227, Percent_Identity=38.3259911894273, Blast_Score=185, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 25382; Mature: 25382

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLILYSMDFGEVTTLLQNYQYEEVKN
CEEEEEECCCCCCCCCEEEEHHCEEEEECCCCCCEEEEEECCHHHHHHHHHCCCHHHHHH
ELVTVAKKVEKSGAECLLMCSNTVHLFAEEVEQAISIPLLHIGDVSAKEMVEQNIKRIGL
HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC
LGTKQTMEQDFYKSRLAKYNIETIIPNDEERTFIHHVILDELSRGIISETSKKRLLQITK
CCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG
HHHHCCCCEEEEECCCCCEEEECCCCEEEEEHHHEEECCCEEEECC
>Mature Secondary Structure
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLILYSMDFGEVTTLLQNYQYEEVKN
CEEEEEECCCCCCCCCEEEEHHCEEEEECCCCCCEEEEEECCHHHHHHHHHCCCHHHHHH
ELVTVAKKVEKSGAECLLMCSNTVHLFAEEVEQAISIPLLHIGDVSAKEMVEQNIKRIGL
HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC
LGTKQTMEQDFYKSRLAKYNIETIIPNDEERTFIHHVILDELSRGIISETSKKRLLQITK
CCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG
HHHHCCCCEEEEECCCCCEEEECCCCEEEEEHHHEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]