| Definition | Bacillus cereus B4264, complete genome. |
|---|---|
| Accession | NC_011725 |
| Length | 5,419,036 |
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The map label for this gene is helD [H]
Identifier: 218233726
GI number: 218233726
Start: 2712460
End: 2714535
Strand: Reverse
Name: helD [H]
Synonym: BCB4264_A2823
Alternate gene names: 218233726
Gene position: 2714535-2712460 (Counterclockwise)
Preceding gene: 218231755
Following gene: 218232869
Centisome position: 50.09
GC content: 34.15
Gene sequence:
>2076_bases ATGAGCAACATATTTGAAGATGAGTTACAAAAAATGAAGGATACTTTACATACGATGGATGAGCAATTGGATAGGCTTGA AAAAATCCCGGTTTATTATGGAGAAGATTTTAAAGAGCAAATTCTTGAAAGTATGAGGGAGTCTAATAGACAAAACTTAC GTATTGGTGTGCAAGAGCCGTACTTTGGAAGGTTAGATTTTCAGGAAGATGGAAAAGAAGAAGTTATGCCGATTTATATC GGAAAAGTAGGGGTTTCGGATATGGACACGATGAAGCCAATCATTATTGATTGGCGAGCGCCTGTCGCAAGTATGTTTTA TTCATTTACCGGTGGAGAAGAATTAGCATTTTATCAATCACCAGATGGGTTAGTAGAAGGTGATGTGTATTTAAAACGAA ACATTTCCATTCGAAAAAGAGAACTTGAACGTGTTGTTGATACATATGTAAAAGGAAATGAAGATGTATCACATGCCGAT GATTTTCTTCTATATCGATTAGGTGAGAATAAAGATAATAAGCTAAAGGATATTGTTTCAACGATTCAATCGGAACAAAA TGATATTATTCGAGCGGAAAGAAATTTACCATTACTTATTCAAGGGGTTGCAGGGAGTGGAAAGACAACAATTGCTTTAC ATCGCCTTGCTTTTTTAATTTATGAATATCGTGAACAACTAGAAGCAGAAAGAATGATCGTATTTGCACCGAATAGTCTG TTTTTAGACTATATTTCGAGTGTACTTCCTGAATTAGGTGTAGGGAATATTAGTCAAACAACGTTTCCAGATTGGGCATT ACGTACGTTAGATGATTCAGTGAAACTAAAGCAGACAGAAAAAAAATTGAAAGAAGCATTTTCAATTAATCGTGATGAAA AGAAGGTAATGCTAGGTAAATTAAAGGGTACGTTGGAATTTAAGACGTTTATTGAAGAGAGAATGATCCAATTTGAAAAT GAGTTAGTTCCGACAAAAGATTTTGAGGCGTGGGATAGAGCGATTATTCCAGTAGAAGATATTAAAAAATGGATGCAAGT TGAATATAAACATTATCCTTTACAGAAAAGAAGAGAACGATTAGTAGGACGAATGAAGCGCTGGATTGAAATTGAACTTA AAAAATTCGGGGAAACAAACGAGAAAAAATTACTTAAAAAAGAAGCGACTAAGAGACTGAACGCATATATGAAGTTTTGG CCGAAAATGAGTGCTCTTTCACTGTATAGTTCAATAGTAAAAAGTAAAGAAATACTTGAGGTATTCCCTGAAGAACTTGT TAAAGAAACAGAAAAGAGTTGTCGTAAAAAAGAAGTGTGTGTAGAAGATTTACCAGCTTTAATATACATACATCATCGTA TAACAGGGATCGAAATCGGGCAGAAGTTTCATCACGTTGTTATTGATGAAGCGCAAGATTTTTCGCCTTTCCAAGTTTAT GTATTAAAAGAAATTACATTAGGTAATTCTTTCACTATATTAGGTGATTTATCGCAAGCGATTTATGATTACCAAGGAAT TGAAGATTGGAATGCTTTTAAGGAAGTATTCCAAGAAACCGGTTATTATGAATTGACAAGAAGTTATCGTTCTACAAAAG AAATTATTGAATTTGCAAATGAAATAATTAAAAATGCAGAAATCCCAGTAGGACTCGCAACACCAGTCTTCCGCAGTGGA GAAGATGTGAAAGTAATTCATGCAGAAAATCAATTTACTGAAATTGTGAAGACGGTAAAACATTTGCAAAATGCAGATGT GAAAACAATTGCGGTAATCGGAAGAACAGAAGATGAATGCCGTGATATATATGTGAAATTAACAAATGCAGGATTAACGG TCAACGTAATTGAAGCAAACCAAAGTAAATATGAAGGTGGTATATCAGTAGTACCTGTCTATTTAGCGAAAGGTTTAGAA TTTGATGCGGTGCTTTTAATTGATGTGGATGAAGAACATTACAAAAACACAAAACATGATGCAAAGTTACTATATGTCGG ATGTACGAGATCACTTCATGACTTATGGGTTTTCCATAGTGGGGAAGCGTCACCTTTAATTAAAGGATTAAAATAA
Upstream 100 bases:
>100_bases TTCGGAAAATTTAAATGGAAACTATTGACTTTATGATTGGATTTTTAATACAATGATACTTCGACTGAAAAATTAGAACG GACAGGAGGGAATCGTCGAA
Downstream 100 bases:
>100_bases AGTGGAACTATAATCAGTGGGGAGTTTTACTGCAAGCTAATGTGGGATAAATATAAAAAGAGGATTTTCTAGTACTGTAT GAAAATCCTCTTTTTTATAT
Product: UvrD/Rep helicase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 691; Mature: 690
Protein sequence:
>691_residues MSNIFEDELQKMKDTLHTMDEQLDRLEKIPVYYGEDFKEQILESMRESNRQNLRIGVQEPYFGRLDFQEDGKEEVMPIYI GKVGVSDMDTMKPIIIDWRAPVASMFYSFTGGEELAFYQSPDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHAD DFLLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL FLDYISSVLPELGVGNISQTTFPDWALRTLDDSVKLKQTEKKLKEAFSINRDEKKVMLGKLKGTLEFKTFIEERMIQFEN ELVPTKDFEAWDRAIIPVEDIKKWMQVEYKHYPLQKRRERLVGRMKRWIEIELKKFGETNEKKLLKKEATKRLNAYMKFW PKMSALSLYSSIVKSKEILEVFPEELVKETEKSCRKKEVCVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY VLKEITLGNSFTILGDLSQAIYDYQGIEDWNAFKEVFQETGYYELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSG EDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDECRDIYVKLTNAGLTVNVIEANQSKYEGGISVVPVYLAKGLE FDAVLLIDVDEEHYKNTKHDAKLLYVGCTRSLHDLWVFHSGEASPLIKGLK
Sequences:
>Translated_691_residues MSNIFEDELQKMKDTLHTMDEQLDRLEKIPVYYGEDFKEQILESMRESNRQNLRIGVQEPYFGRLDFQEDGKEEVMPIYI GKVGVSDMDTMKPIIIDWRAPVASMFYSFTGGEELAFYQSPDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHAD DFLLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL FLDYISSVLPELGVGNISQTTFPDWALRTLDDSVKLKQTEKKLKEAFSINRDEKKVMLGKLKGTLEFKTFIEERMIQFEN ELVPTKDFEAWDRAIIPVEDIKKWMQVEYKHYPLQKRRERLVGRMKRWIEIELKKFGETNEKKLLKKEATKRLNAYMKFW PKMSALSLYSSIVKSKEILEVFPEELVKETEKSCRKKEVCVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY VLKEITLGNSFTILGDLSQAIYDYQGIEDWNAFKEVFQETGYYELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSG EDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDECRDIYVKLTNAGLTVNVIEANQSKYEGGISVVPVYLAKGLE FDAVLLIDVDEEHYKNTKHDAKLLYVGCTRSLHDLWVFHSGEASPLIKGLK >Mature_690_residues SNIFEDELQKMKDTLHTMDEQLDRLEKIPVYYGEDFKEQILESMRESNRQNLRIGVQEPYFGRLDFQEDGKEEVMPIYIG KVGVSDMDTMKPIIIDWRAPVASMFYSFTGGEELAFYQSPDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHADD FLLYRLGENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSLF LDYISSVLPELGVGNISQTTFPDWALRTLDDSVKLKQTEKKLKEAFSINRDEKKVMLGKLKGTLEFKTFIEERMIQFENE LVPTKDFEAWDRAIIPVEDIKKWMQVEYKHYPLQKRRERLVGRMKRWIEIELKKFGETNEKKLLKKEATKRLNAYMKFWP KMSALSLYSSIVKSKEILEVFPEELVKETEKSCRKKEVCVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVYV LKEITLGNSFTILGDLSQAIYDYQGIEDWNAFKEVFQETGYYELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGE DVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDECRDIYVKLTNAGLTVNVIEANQSKYEGGISVVPVYLAKGLEF DAVLLIDVDEEHYKNTKHDAKLLYVGCTRSLHDLWVFHSGEASPLIKGLK
Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]
COG id: COG3973
COG function: function code R; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 80028; Mature: 79897
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNIFEDELQKMKDTLHTMDEQLDRLEKIPVYYGEDFKEQILESMRESNRQNLRIGVQEP CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC YFGRLDFQEDGKEEVMPIYIGKVGVSDMDTMKPIIIDWRAPVASMFYSFTGGEELAFYQS CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEC PDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHADDFLLYRLGENKDNKLKDIVS CCCCEECCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEECCCCCHHHHHHHH TIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL HHHCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH FLDYISSVLPELGVGNISQTTFPDWALRTLDDSVKLKQTEKKLKEAFSINRDEKKVMLGK HHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH LKGTLEFKTFIEERMIQFENELVPTKDFEAWDRAIIPVEDIKKWMQVEYKHYPLQKRRER HCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH LVGRMKRWIEIELKKFGETNEKKLLKKEATKRLNAYMKFWPKMSALSLYSSIVKSKEILE HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VFPEELVKETEKSCRKKEVCVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCEEHHHHHHHHHEECCCCCCCCEEEE VLKEITLGNSFTILGDLSQAIYDYQGIEDWNAFKEVFQETGYYELTRSYRSTKEIIEFAN EEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDEC HHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHH RDIYVKLTNAGLTVNVIEANQSKYEGGISVVPVYLAKGLEFDAVLLIDVDEEHYKNTKHD HEEEEEEECCCEEEEEEECCCCCCCCCCEEEHHHHHCCCCCCEEEEEECCHHHCCCCCCC AKLLYVGCTRSLHDLWVFHSGEASPLIKGLK CEEEEEECCCCHHHEEEEECCCCCCHHCCCC >Mature Secondary Structure SNIFEDELQKMKDTLHTMDEQLDRLEKIPVYYGEDFKEQILESMRESNRQNLRIGVQEP CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC YFGRLDFQEDGKEEVMPIYIGKVGVSDMDTMKPIIIDWRAPVASMFYSFTGGEELAFYQS CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEC PDGLVEGDVYLKRNISIRKRELERVVDTYVKGNEDVSHADDFLLYRLGENKDNKLKDIVS CCCCEECCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEECCCCCHHHHHHHH TIQSEQNDIIRAERNLPLLIQGVAGSGKTTIALHRLAFLIYEYREQLEAERMIVFAPNSL HHHCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH FLDYISSVLPELGVGNISQTTFPDWALRTLDDSVKLKQTEKKLKEAFSINRDEKKVMLGK HHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH LKGTLEFKTFIEERMIQFENELVPTKDFEAWDRAIIPVEDIKKWMQVEYKHYPLQKRRER HCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH LVGRMKRWIEIELKKFGETNEKKLLKKEATKRLNAYMKFWPKMSALSLYSSIVKSKEILE HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VFPEELVKETEKSCRKKEVCVEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQVY HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCEEHHHHHHHHHEECCCCCCCCEEEE VLKEITLGNSFTILGDLSQAIYDYQGIEDWNAFKEVFQETGYYELTRSYRSTKEIIEFAN EEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDEC HHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHH RDIYVKLTNAGLTVNVIEANQSKYEGGISVVPVYLAKGLEFDAVLLIDVDEEHYKNTKHD HEEEEEEECCCEEEEEEECCCCCCCCCCEEEHHHHHCCCCCCEEEEEECCHHHCCCCCCC AKLLYVGCTRSLHDLWVFHSGEASPLIKGLK CEEEEEECCCCHHHEEEEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]