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The map label for this gene is ykkC [H]

Identifier: 218233715

GI number: 218233715

Start: 852148

End: 852492

Strand: Direct

Name: ykkC [H]

Synonym: BCB4264_A0887

Alternate gene names: 218233715

Gene position: 852148-852492 (Clockwise)

Preceding gene: 218231639

Following gene: 218235611

Centisome position: 15.73

GC content: 37.1

Gene sequence:

>345_bases
ATGAAAAATAGAGCTTGGTTATATGTCATATTAACATGTATCTTTGAAATTTTTTGGGTGTTTGGTTTTAATACGGCTAA
TACTTGGTGGCATTGGATTATTATTTTAGGAGTTATCGCTGTTGATTTTCACTTCCTTTCTAAAGCGTGTGAACATCTTG
CAACAGGAACTGTATATGCTGTTTTCGCTGGAGCTGGTACGGTAGGTACTTTCTTAATGGATGTATTTCTTTTCGGTGGA
AGTTTCAGCGCAGGCAAACTATTCTTCATTCTTATGGTAGTAGCCGGCGTTATCGGTTTAAAGTTAGCTGACAATAAAGA
AGAAACTGTGGAAGGAGCTGCTTAA

Upstream 100 bases:

>100_bases
TGGTAAATGAGGATGATATTTGTTTTTATATAGTATTGATGAAAGAGTATATTTTTTTAAAATAAAAATGACTGATAGTC
AGTCATAAGAGGTGAGAGGT

Downstream 100 bases:

>100_bases
AAATGGGTTGGTTTTTCGTATTTTGTGCTGCAATTAGTGAAATAGTCGGTGTGATAGGACTTAAAATGTATAGTAAAGAT
AAGACATTAGCCAATGGTGC

Product: putative sugE protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSAGKLFFILMVVAGVIGLKLADNKEETVEGAA

Sequences:

>Translated_114_residues
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSAGKLFFILMVVAGVIGLKLADNKEETVEGAA
>Mature_114_residues
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSAGKLFFILMVVAGVIGLKLADNKEETVEGAA

Specific function: Part of a multidrug efflux pump. Confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. YkkC/ykkD (TC 2.A.7.1.5) subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 12576; Mature: 12576

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYA
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VFAGAGTVGTFLMDVFLFGGSFSAGKLFFILMVVAGVIGLKLADNKEETVEGAA
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYA
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VFAGAGTVGTFLMDVFLFGGSFSAGKLFFILMVVAGVIGLKLADNKEETVEGAA
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA