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The map label for this gene is lsrB [H]

Identifier: 218233601

GI number: 218233601

Start: 2849240

End: 2850283

Strand: Reverse

Name: lsrB [H]

Synonym: BCB4264_A2976

Alternate gene names: 218233601

Gene position: 2850283-2849240 (Counterclockwise)

Preceding gene: 218232733

Following gene: 218232065

Centisome position: 52.6

GC content: 37.36

Gene sequence:

>1044_bases
ATGAAGAGAAAACTGGGGATTGTATTGATTGTATGTATTTGTTTAATCGGTTTAATTGCGTGTTCTAGCCAAACGGCAGA
TAAGAAAAAGGTTGATGATGTGAAATTTGCATTTATTCCGAAATTAACAGGGGTTGGTTTCTTCACATCGGGTGGTGAAG
GGGCAAAAGAGATGGGAGATAAGTTAGGCGTGCAAGTGAAGTATGATGGACCGTCTGAAGCGAGTGTTTCAGGGCAAGTT
AAATATATAAACAATTTCATTAATCAAAACTATGATGCACTTATGGTTTCATCTACGTCAGTGGATGGGTTATCGCAATC
ACTGCAACGTGCTAAGAAAAAAGGGATGACGGTATTAACATGGGATTCTGATGTGAATCCGAAAGATCGTTCTTTTTATA
TAAGCCAAGGAACACCAGACCAACTTGCTAATTTATTAATAGAAATGACTTCAAAGCAAATTGGAGATAAAGGAAAAGTA
GCCTTCTTTTATTCTAGCCCGACAGTAACGGATCAAAACCAGTGGGTAACGAAAGCGAAAGAAATTATTAAAAAGAAATA
TCCGAACTGGGAAATTGTAACGACGCAGTACGGTGAAAATAATGCGCAAAAGTCTTTGTCAGTAGGAGAGAATATTTTAA
AAACGTATCCTGATATTAACGCAGTCATTTGTCCAGATGCAACGGCACTTCCGGCAATGGCACAAGCGGCTGAAAATTTA
AAAATGGATAAAAAGGTTGTCGTAACTGGCTTCTCTACACCAAACGTTATGCGTGATTACGTAAAACGAGGAACAGTAGC
ACAATTTGGTTTATGGGATGTAAAACAACAAGGTGCTCTCGCAACGTATGTAGCAAATGAAATTGTTGTAAAAGAGAAGA
AGTTAAAAGTAGGGGATAGCTTCGAAGTAAAAGGAATTGGAAAAGTGAAGGTAGAGCCAAACTCCATTCAAGGATATGAT
TATGAGGCAGAAGGGAATGGAATTATCGTATTACCAGAACGAGTTGTATTTACGAAAGATAATATTGATAAGTATAATTT
TTAG

Upstream 100 bases:

>100_bases
TAATAGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAATTACATCAATTCTTAGCGGAGAAAAGAAAGAAT
TTGCATAAGGGGGAAATGTC

Downstream 100 bases:

>100_bases
TAGACAAAAAAACGTCCGAATATATCGGACGTTTTTTTATTTCTTCATTAATTATGAACAGTTTCTTTTTCGTTTAATCC
AAGTGTACGACCAGTAGAAG

Product: putative sugar ABC transporter, sugar-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MKRKLGIVLIVCICLIGLIACSSQTADKKKVDDVKFAFIPKLTGVGFFTSGGEGAKEMGDKLGVQVKYDGPSEASVSGQV
KYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKV
AFFYSSPTVTDQNQWVTKAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKEKKLKVGDSFEVKGIGKVKVEPNSIQGYD
YEAEGNGIIVLPERVVFTKDNIDKYNF

Sequences:

>Translated_347_residues
MKRKLGIVLIVCICLIGLIACSSQTADKKKVDDVKFAFIPKLTGVGFFTSGGEGAKEMGDKLGVQVKYDGPSEASVSGQV
KYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKV
AFFYSSPTVTDQNQWVTKAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKEKKLKVGDSFEVKGIGKVKVEPNSIQGYD
YEAEGNGIIVLPERVVFTKDNIDKYNF
>Mature_347_residues
MKRKLGIVLIVCICLIGLIACSSQTADKKKVDDVKFAFIPKLTGVGFFTSGGEGAKEMGDKLGVQVKYDGPSEASVSGQV
KYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKV
AFFYSSPTVTDQNQWVTKAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKEKKLKVGDSFEVKGIGKVKVEPNSIQGYD
YEAEGNGIIVLPERVVFTKDNIDKYNF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=339, Percent_Identity=59.5870206489675, Blast_Score=402, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38151; Mature: 38151

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKLGIVLIVCICLIGLIACSSQTADKKKVDDVKFAFIPKLTGVGFFTSGGEGAKEMGD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEECCCCCCEEEECCCCCHHHHHH
KLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLT
HHCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
WDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAK
ECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
EIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKEKKLKVGDS
CCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCHHCCCCEEHHHHHHHEEEHHHCCCCCC
FEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIDKYNF
EEECCCEEEEECCCCCCCCEEEECCCEEEEECCEEEEECCCCCCCCC
>Mature Secondary Structure
MKRKLGIVLIVCICLIGLIACSSQTADKKKVDDVKFAFIPKLTGVGFFTSGGEGAKEMGD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEECCCCCCEEEECCCCCHHHHHH
KLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLT
HHCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
WDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAK
ECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHH
EIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAAENL
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC
KMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKEKKLKVGDS
CCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCHHCCCCEEHHHHHHHEEEHHHCCCCCC
FEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIDKYNF
EEECCCEEEEECCCCCCCCEEEECCCEEEEECCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA