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The map label for this gene is lsrD [H]

Identifier: 218232733

GI number: 218232733

Start: 2850280

End: 2851269

Strand: Reverse

Name: lsrD [H]

Synonym: BCB4264_A2977

Alternate gene names: 218232733

Gene position: 2851269-2850280 (Counterclockwise)

Preceding gene: 218234666

Following gene: 218233601

Centisome position: 52.62

GC content: 37.37

Gene sequence:

>990_bases
ATGAAGTATGTATATAGATGGGAAGGGGTTCTAATTGTATTACTTCTTGTAGAATTCATCCTTTTTAGTTTAATAAATAG
TGATTTCTTAAATATTAGTAATCTCCTTTTTAGTACAAATGATTTCTTATTTATCGCAATTGCGGCGATACCAATGACTT
TTGTTATAGTAACAGGAGGAATTGATGTATCGATCGGCTCAATAATGGGGCTCACTTCGATCTTAATCGGTGTACTTTGG
ATGAACGGAATACCTATTTTGTTTGCTGTTATAATCGCCCTAATAATTAGTTGTTTAGCAGGCGCTTTAAACGGACTCAT
TATAAAAATGACGGATGTAGAACCACTCGTCGTTACACTCGGAACGATGTTTTTATACGGGGGAATTGCCCTCGTCATTT
CAGGAGGGGCAGGTGCTTCTGGGTATGAAGGAATAAGCGGTTTACCAGACGTATTTGTACAACTGGCAAATGGTAGTTTT
ATAGGAATACCGAATTTATTATGGCTACTGATCGTATTAACAGTTTTATGTACTGTGTTATTTCATCGAACTATATACGG
GCGCCATGTAAAATTAACAGGTGCGAACGAAAATGCAGCAAAATACACTGGGATTAAAACGAAAAAAGTAGTCATTATTG
CTTACATACTTTCAGGGTTAGGAGGTGGATTAGGAGGCGCTTTCTTAACTGCCTACTTCGGTTCCGCACGTGCTGATATG
GGAAGTGAAACAATTTTACCAATCATTACAGCAGTCGTCTTAGGCGGTACACTTATTACAGGCGGAAAAGGAAGCATTAT
TGGTACTGTACTGGCGAGTATTTTCATTGGGCTCATGCAGTATGGCTTGCAAATGACGGGTTTAACAAATGAACAATCCA
ATGTAGTAATAGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAATTACATCAATTCTTAGCGGAGAAAAGA
AAGAATTTGCATAAGGGGGAAATGTCATGA

Upstream 100 bases:

>100_bases
CAGCATTTTGGAATAATGCTATTTCAGGTTTTTTATTATTACTTATCATCATATTAGATAGTGTTATGAAAAAGTGGAAG
GCAGAAAGGAGGATGAATCT

Downstream 100 bases:

>100_bases
AGAGAAAACTGGGGATTGTATTGATTGTATGTATTTGTTTAATCGGTTTAATTGCGTGTTCTAGCCAAACGGCAGATAAG
AAAAAGGTTGATGATGTGAA

Product: putative ribose ABC transporter, permease protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKYVYRWEGVLIVLLLVEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSIGSIMGLTSILIGVLW
MNGIPILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDVFVQLANGSF
IGIPNLLWLLIVLTVLCTVLFHRTIYGRHVKLTGANENAAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFLAEKR
KNLHKGEMS

Sequences:

>Translated_329_residues
MKYVYRWEGVLIVLLLVEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSIGSIMGLTSILIGVLW
MNGIPILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDVFVQLANGSF
IGIPNLLWLLIVLTVLCTVLFHRTIYGRHVKLTGANENAAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFLAEKR
KNLHKGEMS
>Mature_329_residues
MKYVYRWEGVLIVLLLVEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSIGSIMGLTSILIGVLW
MNGIPILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDVFVQLANGSF
IGIPNLLWLLIVLTVLCTVLFHRTIYGRHVKLTGANENAAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFLAEKR
KNLHKGEMS

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=327, Percent_Identity=42.5076452599388, Blast_Score=245, Evalue=2e-66,
Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=31.5789473684211, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=30.3225806451613, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1790524, Length=259, Percent_Identity=32.8185328185328, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=31.0714285714286, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787793, Length=303, Percent_Identity=29.7029702970297, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693152, Length=265, Percent_Identity=28.6792452830189, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=29.296875, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788471, Length=274, Percent_Identity=29.9270072992701, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789992, Length=140, Percent_Identity=29.2857142857143, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34943; Mature: 34943

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVYRWEGVLIVLLLVEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGG
CCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECC
IDVSIGSIMGLTSILIGVLWMNGIPILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTL
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
GTMFLYGGIALVISGGAGASGYEGISGLPDVFVQLANGSFIGIPNLLWLLIVLTVLCTVL
HHHHHHCCHHEEEECCCCCCCCCCCCCHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHH
FHRTIYGRHVKLTGANENAAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
HHHHHHCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCC
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGII
CCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHH
LILSVIMRHFKLHQFLAEKRKNLHKGEMS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKYVYRWEGVLIVLLLVEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGG
CCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECC
IDVSIGSIMGLTSILIGVLWMNGIPILFAVIIALIISCLAGALNGLIIKMTDVEPLVVTL
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
GTMFLYGGIALVISGGAGASGYEGISGLPDVFVQLANGSFIGIPNLLWLLIVLTVLCTVL
HHHHHHCCHHEEEECCCCCCCCCCCCCHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHH
FHRTIYGRHVKLTGANENAAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
HHHHHHCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCC
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGII
CCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHH
LILSVIMRHFKLHQFLAEKRKNLHKGEMS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA