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The map label for this gene is ysfB [H]

Identifier: 218233562

GI number: 218233562

Start: 1309032

End: 1310147

Strand: Reverse

Name: ysfB [H]

Synonym: BCB4264_A1349

Alternate gene names: 218233562

Gene position: 1310147-1309032 (Counterclockwise)

Preceding gene: 218231089

Following gene: 218235034

Centisome position: 24.18

GC content: 32.89

Gene sequence:

>1116_bases
ATGCTATTTCCTGATTTAGCGAATAAAATTGTACGAGAAGTACGCAGACTAATTACAGAAAATATTATTATCATTAATAT
AGAAGGCGTTATTATCGCAAGTACAGATACAGAAAGAATTGGTCAATTTCATGAAGGTGCACTCCGCTGTGCCAAACAAA
AGAAAACCGTCATCATTACAAAAGAAGATGAAAGGCGATTGCAAGGTGTAAAGGCTGGGATGAATCTTCCTTTATTATTT
CATGATGAAGTAATTGGTGTCATTGGAATTACAGGAGAACCTGAAAATATTTCACGCTACGGAGAAATATTGCGTAAGAT
GACCGAATTATTAATTCATGAAAACTACTTTTTAGAGCAACTAGAACTTGAGCACCGTTCTTATGAAGCTTTTGTCTTTG
ATTGGCTTCAAAATACAGAGTGGTCTCCAAGTTTTCTTGATCGCGCCAAAACACTTGGCATTGATTTATATAAGAAAAAA
CAACTTATTTTGTTTTCTATTGGCAAAAATGACACGATGCTCCAGCGTAAAATATGGCAACACATACGTAATATTTTAAC
AAAAGAGCATCTATTTGTTCGCTGGGGAAATGATCGTTTTATTTTATTTACAGCGATGAGCTCCAAAGAACAAACTTATC
AATTTTTAAAACGGTTAAAACAAGACTGCGAAACTTTATTTTCTATTCCTTTATATATAGGGATTGGACAAACAGTTACC
CCAAACAATATGAGCATATGTTACGAACAAGCATTACGCGCTCTTTCTGTATCATTGGAGACGAAAAAAATTGTATTTAA
TGAAGATTTACGTTTAGAAATGTGTTTACAAGATATTTCTGTCGAAACGCGTGAACAATTTCTAGAGCGTACCATCGAAA
ACTTATTATCATTTCCTGAGCTTATGCAAACTTTACGCTTATTTGTCGATTATAACCAATCTTATAAACAGACGGCTAAA
CAATTACATATACACATTAACACATTACATTACAGGCTAAAAAAGATTGAAGAACATACAGGACTTGATCCAAAACAATT
CAAAGACTTAAACGTTTTGTACTTCGCACTTCTCCTATTAGATAATTATACAAAAAAGAATGATAAAACAGATTAA

Upstream 100 bases:

>100_bases
TGTAAAATAACAAATAAATGTGTGGAAAGTGTGAAATTTCCCTTTCTTACTCAATTTACATATATAATGTACAACAAATA
GAATTTGAGGTGTGTCAATT

Downstream 100 bases:

>100_bases
TCTTTAGATGATTATACATAGAAAGAATCCCTCGACTTTTTTATCATTATAATGAAAGCACTGTTACCACGTTGTTTATT
ATAACTAAACACGTTAACAG

Product: putative carbohydrate diacid regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MLFPDLANKIVREVRRLITENIIIINIEGVIIASTDTERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISRYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTEWSPSFLDRAKTLGIDLYKKK
QLILFSIGKNDTMLQRKIWQHIRNILTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQTVT
PNNMSICYEQALRALSVSLETKKIVFNEDLRLEMCLQDISVETREQFLERTIENLLSFPELMQTLRLFVDYNQSYKQTAK
QLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALLLLDNYTKKNDKTD

Sequences:

>Translated_371_residues
MLFPDLANKIVREVRRLITENIIIINIEGVIIASTDTERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISRYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTEWSPSFLDRAKTLGIDLYKKK
QLILFSIGKNDTMLQRKIWQHIRNILTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQTVT
PNNMSICYEQALRALSVSLETKKIVFNEDLRLEMCLQDISVETREQFLERTIENLLSFPELMQTLRLFVDYNQSYKQTAK
QLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALLLLDNYTKKNDKTD
>Mature_371_residues
MLFPDLANKIVREVRRLITENIIIINIEGVIIASTDTERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISRYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTEWSPSFLDRAKTLGIDLYKKK
QLILFSIGKNDTMLQRKIWQHIRNILTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQTVT
PNNMSICYEQALRALSVSLETKKIVFNEDLRLEMCLQDISVETREQFLERTIENLLSFPELMQTLRLFVDYNQSYKQTAK
QLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALLLLDNYTKKNDKTD

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=379, Percent_Identity=30.8707124010554, Blast_Score=164, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43735; Mature: 43735

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFPDLANKIVREVRRLITENIIIINIEGVIIASTDTERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLQGVKAGMNLPLLFHDEVIGVIGITGEPENISRYGEILRKMTELLIHENYFLEQ
CCHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTEWSPSFLDRAKTLGIDLYKKKQLILFSIGKNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHH
HIRNILTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQTVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCEEC
PNNMSICYEQALRALSVSLETKKIVFNEDLRLEMCLQDISVETREQFLERTIENLLSFPE
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LMQTLRLFVDYNQSYKQTAKQLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALLLL
HHHHHHHHHHCCHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNYTKKNDKTD
HCCCCCCCCCC
>Mature Secondary Structure
MLFPDLANKIVREVRRLITENIIIINIEGVIIASTDTERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLQGVKAGMNLPLLFHDEVIGVIGITGEPENISRYGEILRKMTELLIHENYFLEQ
CCHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTEWSPSFLDRAKTLGIDLYKKKQLILFSIGKNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHH
HIRNILTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQTVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCEEC
PNNMSICYEQALRALSVSLETKKIVFNEDLRLEMCLQDISVETREQFLERTIENLLSFPE
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LMQTLRLFVDYNQSYKQTAKQLHIHINTLHYRLKKIEEHTGLDPKQFKDLNVLYFALLLL
HHHHHHHHHHCCHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNYTKKNDKTD
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]