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The map label for this gene is ykrA [H]

Identifier: 218233384

GI number: 218233384

Start: 3993668

End: 3994441

Strand: Reverse

Name: ykrA [H]

Synonym: BCB4264_A4078

Alternate gene names: 218233384

Gene position: 3994441-3993668 (Counterclockwise)

Preceding gene: 218234207

Following gene: 218232014

Centisome position: 73.71

GC content: 33.46

Gene sequence:

>774_bases
ATGAATGATAAAATTGTCTTTTTTGATATTGATGGAACATTATTAGATCATGATAAAAAAATTCCGCAATCTACACGAGA
TGCAGTAAAACAGTTACAAGAAAAAGGTGTACATGTAGCAATTGCGACAGGGCGCGCGCCATTTATGTTCGAAGATATTC
GTAAGGAACTTAATATACATAATTATGTTAGTTTTAATGGACAATATGTTGTCTTTGAAGATGAGGTAATATTTAATAAT
CCGTTACATCCAGATGCTTTACATAAGTTTACTCAGTTTGCAAAACAAGAAGGATATCCACTTGTATATCTTGACCATCA
AGATATGAGAGCATCAGTGGAATATCATGATTATGTGAAAGAAGGCTTTGGAAGCTTAAACTTTGAGCATCCAGCATATG
AGCCTAATTTTTATGAGGAACGTAATATTTATCAAACACTACTTTTTTGTGAAGTAAATGAAGAGGAAAAGTTTATTAAT
CATTATCCAGATTTCCATTTTATTCGTTGGCATGCATATTCAATGGATATCATTCCGAATGGTGGTTCTAAGGCAAAAGG
AATTGAGAAATACATTGAAAAGTTAGGTTTTAATCGTGATCAAGTGTATGCATTTGGAGATGGCTTAAATGATTTAGAAA
TGATCGAAGCCGTTGGCACAGGTATTGTGATGGGAAATGGCCATGAAGACTTGAAAAAACTTGCAAATCATGTGACAAAG
GATGTTAATGAAGACGGTATATATCATGGACTAAAGTGGGCTGGATTGCTATAA

Upstream 100 bases:

>100_bases
ACGCTTTCTTCACAGATGTTTAATATGTTATACTTTTTTTTAGAATTTGAAAAGTGATATTCAAAATAGGAATATAGAGT
CTCAGAAAGGATTTTGACAA

Downstream 100 bases:

>100_bases
GTGAATATGGAACCCATTTCATAATAAAAAGGCGGAAGATTAACTTCCGCCTTTTTATTATTATCGCTCTAGAGGTTTGG
AATCATCAGGAGCGGCAAAA

Product: hydrolase, haloacid dehalogenase-like family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNDKIVFFDIDGTLLDHDKKIPQSTRDAVKQLQEKGVHVAIATGRAPFMFEDIRKELNIHNYVSFNGQYVVFEDEVIFNN
PLHPDALHKFTQFAKQEGYPLVYLDHQDMRASVEYHDYVKEGFGSLNFEHPAYEPNFYEERNIYQTLLFCEVNEEEKFIN
HYPDFHFIRWHAYSMDIIPNGGSKAKGIEKYIEKLGFNRDQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
DVNEDGIYHGLKWAGLL

Sequences:

>Translated_257_residues
MNDKIVFFDIDGTLLDHDKKIPQSTRDAVKQLQEKGVHVAIATGRAPFMFEDIRKELNIHNYVSFNGQYVVFEDEVIFNN
PLHPDALHKFTQFAKQEGYPLVYLDHQDMRASVEYHDYVKEGFGSLNFEHPAYEPNFYEERNIYQTLLFCEVNEEEKFIN
HYPDFHFIRWHAYSMDIIPNGGSKAKGIEKYIEKLGFNRDQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
DVNEDGIYHGLKWAGLL
>Mature_257_residues
MNDKIVFFDIDGTLLDHDKKIPQSTRDAVKQLQEKGVHVAIATGRAPFMFEDIRKELNIHNYVSFNGQYVVFEDEVIFNN
PLHPDALHKFTQFAKQEGYPLVYLDHQDMRASVEYHDYVKEGFGSLNFEHPAYEPNFYEERNIYQTLLFCEVNEEEKFIN
HYPDFHFIRWHAYSMDIIPNGGSKAKGIEKYIEKLGFNRDQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
DVNEDGIYHGLKWAGLL

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI48994981, Length=243, Percent_Identity=28.3950617283951, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786982, Length=271, Percent_Identity=26.9372693726937, Blast_Score=88, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 29770; Mature: 29770

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKIVFFDIDGTLLDHDKKIPQSTRDAVKQLQEKGVHVAIATGRAPFMFEDIRKELNIH
CCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
NYVSFNGQYVVFEDEVIFNNPLHPDALHKFTQFAKQEGYPLVYLDHQDMRASVEYHDYVK
EEEEECCEEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
EGFGSLNFEHPAYEPNFYEERNIYQTLLFCEVNEEEKFINHYPDFHFIRWHAYSMDIIPN
HHCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCHHHHHHHCCCEEEEEEEEEEEEEEEC
GGSKAKGIEKYIEKLGFNRDQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHH
DVNEDGIYHGLKWAGLL
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNDKIVFFDIDGTLLDHDKKIPQSTRDAVKQLQEKGVHVAIATGRAPFMFEDIRKELNIH
CCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCC
NYVSFNGQYVVFEDEVIFNNPLHPDALHKFTQFAKQEGYPLVYLDHQDMRASVEYHDYVK
EEEEECCEEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
EGFGSLNFEHPAYEPNFYEERNIYQTLLFCEVNEEEKFINHYPDFHFIRWHAYSMDIIPN
HHCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCHHHHHHHCCCEEEEEEEEEEEEEEEC
GGSKAKGIEKYIEKLGFNRDQVYAFGDGLNDLEMIEAVGTGIVMGNGHEDLKKLANHVTK
CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHH
DVNEDGIYHGLKWAGLL
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]