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The map label for this gene is ymfF [H]

Identifier: 218232950

GI number: 218232950

Start: 3802754

End: 3804028

Strand: Reverse

Name: ymfF [H]

Synonym: BCB4264_A3886

Alternate gene names: 218232950

Gene position: 3804028-3802754 (Counterclockwise)

Preceding gene: 218234522

Following gene: 218235990

Centisome position: 70.2

GC content: 33.88

Gene sequence:

>1275_bases
ATGAAACTAATGGAACAACAACTACATGAGTTAGGTGGTTTGCGCGTACATATTATTCCGACTGATAAATATAAAACGAA
TACCTTTGTATTTCGTTTTAAAGCGCCTTTAAATGAGGAGACGGTGACAGAGCGTGCCCTATTGCCATACGTATTGCAAA
GTGCGACAGAAAAATTACCTTCTGTAATTCGTCTTCGTCAATATTTAGAAGAATTATACGGATCTTCTTTAGCGGTAGAT
GTAAGTAAAAAAGGGGAAGACCATATTATCTCCATTTATGTAGACATTGCAAATGAAGTTTATTTACATGATGCACCACC
GTTATTTGAAAAAGCGCTTTCTATGTTGTCAGATATTGTGTTACATCCAGCAACGGAGGGGAACGGTTTCCTATCTTCTA
TCGTAGAAAGTGAAAAAAGAGCACTGTTACAGAGAATTGAAGCTACTTATGATGATAAAATGCGTTATGCAAACGAGCGT
TTAATTGAAGAAATGTGCAAAGTAGAACCGTATCGCTTAAGTGCAAATGGAAAAAAAGAGAGTGTTATGTCTATTACAAA
TGAAAGTTTGTATCAATATTATCAAAAGGTGTTAGCGGAAGATGAAATGGATCTATATATTATTGGTGATATTTCAGAAA
ACGCCGTTGATCTTGTAAGTAAGTATTTTTCTATTTCAACTCGTCCAGTGAGAGAAAGAAATGTACTCCTTCATAGACGA
AATAATGAAGAAAAAGAAGTTGTTGAAAAACAAGAATTAAAACAAAGTAAATTACACATCGGTTATCGTACATTTGTCAC
ATATAAAGATGAAGATTATTTTGCATTGCAATTGTTCAATGGATTGTTTGGTGGCTTTTCTCATTCGAAGTTATTCGTAA
ATGTGCGTGAAAAAAATAGTTTAGCGTACTATGCAGCATCGCGCTTTGAAAGTCATAAAGGTTTATTATTTGTTATGTCA
GGAATCGAAGCGAAAAATTATGAAAAAGCAGTTGAGATTATTAAAGAACAAATGCTTGCGATGCAAAACGGAGAGTTTTC
TGAAGAAGAAATACATCAAACAAAAAGTGTCATCCAAAATCAAATATTAGAGGCAATTGATACACCACGTGGCTTTGTAG
AAATGCTATATCATGGTATTATTTCAGATCGTACACGTCCAGTTGAAGAATGGCTTACAGGTATAGAAAGTGTGACGAAA
GAAGAAATTGTAAAAGTTGCTAAAAATATTGAACTAGATACAATTTACTTTTTACAAGGAACGGAGGGAGAGTAA

Upstream 100 bases:

>100_bases
AATCATATGTAAGCATAATAAGGGAGAAAAGTTGATTTTTTATTTCTAAAAACTGTATATTGAAGAGGAATATTCCTATA
TACGTAAAGGAGGGCTATAA

Downstream 100 bases:

>100_bases
ATGGAGAAAATTGTTTATGAGCAATTAAAAGAAACACTCTATTATGAAAAACTTCCTAATGGATTAGATGTATATGTTTT
ACCGAAACAAGGATTTAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MKLMEQQLHELGGLRVHIIPTDKYKTNTFVFRFKAPLNEETVTERALLPYVLQSATEKLPSVIRLRQYLEELYGSSLAVD
VSKKGEDHIISIYVDIANEVYLHDAPPLFEKALSMLSDIVLHPATEGNGFLSSIVESEKRALLQRIEATYDDKMRYANER
LIEEMCKVEPYRLSANGKKESVMSITNESLYQYYQKVLAEDEMDLYIIGDISENAVDLVSKYFSISTRPVRERNVLLHRR
NNEEKEVVEKQELKQSKLHIGYRTFVTYKDEDYFALQLFNGLFGGFSHSKLFVNVREKNSLAYYAASRFESHKGLLFVMS
GIEAKNYEKAVEIIKEQMLAMQNGEFSEEEIHQTKSVIQNQILEAIDTPRGFVEMLYHGIISDRTRPVEEWLTGIESVTK
EEIVKVAKNIELDTIYFLQGTEGE

Sequences:

>Translated_424_residues
MKLMEQQLHELGGLRVHIIPTDKYKTNTFVFRFKAPLNEETVTERALLPYVLQSATEKLPSVIRLRQYLEELYGSSLAVD
VSKKGEDHIISIYVDIANEVYLHDAPPLFEKALSMLSDIVLHPATEGNGFLSSIVESEKRALLQRIEATYDDKMRYANER
LIEEMCKVEPYRLSANGKKESVMSITNESLYQYYQKVLAEDEMDLYIIGDISENAVDLVSKYFSISTRPVRERNVLLHRR
NNEEKEVVEKQELKQSKLHIGYRTFVTYKDEDYFALQLFNGLFGGFSHSKLFVNVREKNSLAYYAASRFESHKGLLFVMS
GIEAKNYEKAVEIIKEQMLAMQNGEFSEEEIHQTKSVIQNQILEAIDTPRGFVEMLYHGIISDRTRPVEEWLTGIESVTK
EEIVKVAKNIELDTIYFLQGTEGE
>Mature_424_residues
MKLMEQQLHELGGLRVHIIPTDKYKTNTFVFRFKAPLNEETVTERALLPYVLQSATEKLPSVIRLRQYLEELYGSSLAVD
VSKKGEDHIISIYVDIANEVYLHDAPPLFEKALSMLSDIVLHPATEGNGFLSSIVESEKRALLQRIEATYDDKMRYANER
LIEEMCKVEPYRLSANGKKESVMSITNESLYQYYQKVLAEDEMDLYIIGDISENAVDLVSKYFSISTRPVRERNVLLHRR
NNEEKEVVEKQELKQSKLHIGYRTFVTYKDEDYFALQLFNGLFGGFSHSKLFVNVREKNSLAYYAASRFESHKGLLFVMS
GIEAKNYEKAVEIIKEQMLAMQNGEFSEEEIHQTKSVIQNQILEAIDTPRGFVEMLYHGIISDRTRPVEEWLTGIESVTK
EEIVKVAKNIELDTIYFLQGTEGE

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR007863 [H]

Pfam domain/function: PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 48946; Mature: 48946

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00659 GLYCOSYL_HYDROL_F5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLMEQQLHELGGLRVHIIPTDKYKTNTFVFRFKAPLNEETVTERALLPYVLQSATEKLP
CCHHHHHHHHHCCCEEEEEECCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SVIRLRQYLEELYGSSLAVDVSKKGEDHIISIYVDIANEVYLHDAPPLFEKALSMLSDIV
HHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCEEEECCCCHHHHHHHHHHHHHH
LHPATEGNGFLSSIVESEKRALLQRIEATYDDKMRYANERLIEEMCKVEPYRLSANGKKE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHH
SVMSITNESLYQYYQKVLAEDEMDLYIIGDISENAVDLVSKYFSISTRPVRERNVLLHRR
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHEEECC
NNEEKEVVEKQELKQSKLHIGYRTFVTYKDEDYFALQLFNGLFGGFSHSKLFVNVREKNS
CCCHHHHHHHHHHHHHHHEECEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCC
LAYYAASRFESHKGLLFVMSGIEAKNYEKAVEIIKEQMLAMQNGEFSEEEIHQTKSVIQN
EEEHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QILEAIDTPRGFVEMLYHGIISDRTRPVEEWLTGIESVTKEEIVKVAKNIELDTIYFLQG
HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
TEGE
CCCC
>Mature Secondary Structure
MKLMEQQLHELGGLRVHIIPTDKYKTNTFVFRFKAPLNEETVTERALLPYVLQSATEKLP
CCHHHHHHHHHCCCEEEEEECCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SVIRLRQYLEELYGSSLAVDVSKKGEDHIISIYVDIANEVYLHDAPPLFEKALSMLSDIV
HHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCEEEECCCCHHHHHHHHHHHHHH
LHPATEGNGFLSSIVESEKRALLQRIEATYDDKMRYANERLIEEMCKVEPYRLSANGKKE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHH
SVMSITNESLYQYYQKVLAEDEMDLYIIGDISENAVDLVSKYFSISTRPVRERNVLLHRR
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHEEECC
NNEEKEVVEKQELKQSKLHIGYRTFVTYKDEDYFALQLFNGLFGGFSHSKLFVNVREKNS
CCCHHHHHHHHHHHHHHHEECEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCC
LAYYAASRFESHKGLLFVMSGIEAKNYEKAVEIIKEQMLAMQNGEFSEEEIHQTKSVIQN
EEEHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QILEAIDTPRGFVEMLYHGIISDRTRPVEEWLTGIESVTKEEIVKVAKNIELDTIYFLQG
HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
TEGE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]