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The map label for this gene is yabR [H]

Identifier: 218231669

GI number: 218231669

Start: 63668

End: 64153

Strand: Direct

Name: yabR [H]

Synonym: BCB4264_A0066

Alternate gene names: 218231669

Gene position: 63668-64153 (Clockwise)

Preceding gene: 218233301

Following gene: 218231970

Centisome position: 1.17

GC content: 42.39

Gene sequence:

>486_bases
ATGTCAATCGAGGTAGGCAGCAAGTTACAGGGTAAAGTAACAGGTATTACAAATTTTGGGGCTTTTGTGGAGCTGCCAGA
GGGCTTAACGGGTCTTGTTCATATTAGTGAAGTTGCTGATAACTATGTAAAAGATATTAACGATCACTTAAAAGTGGGCG
ACCAAGTAGAAGTAAAAGTTATTAATGTTGAAAAAGATGGAAAGATTGGTTTATCTATCAAAAAAGCGAAAGAACGTGAA
AAAACAGAAGGAGATCGTCCACGTGGTGAATACCAACGCGGTGGTGATCAACAACGTTCTGGACGTCCACAACGTAATAA
TCGCTCTTTCAACAGAGATAATCGCGGTGGCGGTAACGACCGAGCTCCGAAAGAAACATTTGAGCAAAAGATGGCACGCT
TCTTAAAAGATAGCGAAGATCGTTTAACTTCTTTAAAGCGTAACACAGAGTCTAAACGTGGTGGCCGTGGCGCGCGTCGC
GGATAA

Upstream 100 bases:

>100_bases
TGTTTCTAAGTAGAGTATGTCTTATTGACACTATATTTTAGGATTATATATAATAAAGTAAAATTTGACTTTTTAACCAC
TAAGGAGGAGCATTTTTTTT

Downstream 100 bases:

>100_bases
TAAGGACGTTTAGTTTTTAACATATAGAGAGGTACCCAGAGTGATGGCTCAGGGTGCTTTTTTATATGTAAAAAATATTT
TCAAAAAAGTTTTTGAGATG

Product: hypothetical protein

Products: RNAn; a nucleoside diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKERE
KTEGDRPRGEYQRGGDQQRSGRPQRNNRSFNRDNRGGGNDRAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARR
G

Sequences:

>Translated_161_residues
MSIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKERE
KTEGDRPRGEYQRGGDQQRSGRPQRNNRSFNRDNRGGGNDRAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARR
G
>Mature_160_residues
SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKEREK
TEGDRPRGEYQRGGDQQRSGRPQRNNRSFNRDNRGGGNDRAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG

Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1098

COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI145693187, Length=79, Percent_Identity=50.6329113924051, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI87082262, Length=107, Percent_Identity=38.3177570093458, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00575 S1 [H]

EC number: 2.7.7.8 [C]

Molecular weight: Translated: 17996; Mature: 17865

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKV
CCCCCCCCCCCEECCEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
INVEKDGKIGLSIKKAKEREKTEGDRPRGEYQRGGDQQRSGRPQRNNRSFNRDNRGGGND
EEECCCCCCCEEEHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCCCCC
>Mature Secondary Structure 
SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKV
CCCCCCCCCCEECCEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
INVEKDGKIGLSIKKAKEREKTEGDRPRGEYQRGGDQQRSGRPQRNNRSFNRDNRGGGND
EEECCCCCCCEEEHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 4500 [C]

Specific activity: NA

Km value (mM): NA

Substrates: RNAn+1; phosphate [C]

Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8113187; 7584024; 9384377 [H]