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The map label for this gene is yddE [C]

Identifier: 218231126

GI number: 218231126

Start: 3299538

End: 3300437

Strand: Reverse

Name: yddE [C]

Synonym: BCB4264_A3421

Alternate gene names: 218231126

Gene position: 3300437-3299538 (Counterclockwise)

Preceding gene: 218232773

Following gene: 218232746

Centisome position: 60.9

GC content: 35.33

Gene sequence:

>900_bases
ATGAAGACTATAAATGTATTTCATTACGACGCATTTACGAATAAACCAAATAAGGGAAATCCAGCAGGTATTGTATTAGA
AGCAGATGGATTAACGGAAGAGGAAATGCAAATTATTGCTGAAAAAGTTGGATATAACGAAACAACTTTTGTTCTTTCCT
CAGAAGTAGGAGATATAAGAATGCGCTATTTTACACCTGGTTTTGAAATGGATTTATGTGGTCATGGGACAGTAGGGACG
ATATTTGCCTTGCGCGAAAAAGGTTTATTAGAAGAGAAAAGTAACCTTACGATTGAAACGAAGGCTGGGATTTTACCGAT
ACAAATAGGTGTAAATGAAAATGGAGAAACCTTTATTAAAATGAGACAGGCAGCACCTCAGTTTAAAGAATTTACAGGTT
CAGCAGAAGAATTAGCTCATAGTATCGGTTTAGAAGTAAATGATTTAGATGTAAGTTTACCGATTGTATATGGAAGTACT
GGTAATTGGACTGTAATTGTACCGATTAAAAATCTTAATGCATGTGAGAGAATGAAACCTAATAATGCTGCATTTCCATC
AGTATTAAAAGAAATACCTAATGCTTCTATTCACCCAATTTGTCTAGAAACTTATGATGAAATAGCACAAATGCACGGCC
GTCATTTTTCATCAGCTTACGCTGGGACGATTGAAGATCCAGTGACAGGAACAGCTTCAGGTGTAATGGGAGCGTATTAT
GCGGAGTATTTAGAGAAAGATTTTGAACATGAATTGGGTTTAATCGTTGAGCAAGGACAGGAAATAAATAAAGATGGCCG
TGTAACTGTTTATGTAACGAAAGGGATAGAAAACGAAAAGTTACAAATAGATATTGCTGGAACAGCGGTGTATGTGAAAG
AGTTTGAAGTTTTAATATAA

Upstream 100 bases:

>100_bases
ATGAAAAGATGCAGAGGATATTTTGGAGAAATAATTGTTCGTTGAAAACGGAGATAGAGCTGTATTATAAAATCTTTAAA
GAAGGTTAGGAGAAAAGAAA

Downstream 100 bases:

>100_bases
AAAAGAAAGCCCGGCATACATCCGGACTTTCATTATCTGTTCAACACTTCAATATACGAAGCATCTCCAGTTGTTCTTAA
AGCAGAGCGAAAATTGTTAT

Product: phenazine biosynthesis protein, PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKTINVFHYDAFTNKPNKGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
IFALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLNACERMKPNNAAFPSVLKEIPNASIHPICLETYDEIAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
AEYLEKDFEHELGLIVEQGQEINKDGRVTVYVTKGIENEKLQIDIAGTAVYVKEFEVLI

Sequences:

>Translated_299_residues
MKTINVFHYDAFTNKPNKGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
IFALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLNACERMKPNNAAFPSVLKEIPNASIHPICLETYDEIAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
AEYLEKDFEHELGLIVEQGQEINKDGRVTVYVTKGIENEKLQIDIAGTAVYVKEFEVLI
>Mature_299_residues
MKTINVFHYDAFTNKPNKGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
IFALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLNACERMKPNNAAFPSVLKEIPNASIHPICLETYDEIAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
AEYLEKDFEHELGLIVEQGQEINKDGRVTVYVTKGIENEKLQIDIAGTAVYVKEFEVLI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=298, Percent_Identity=33.8926174496644, Blast_Score=145, Evalue=4e-36,
Organism=Saccharomyces cerevisiae, GI6321818, Length=295, Percent_Identity=28.4745762711864, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32933; Mature: 32933

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINVFHYDAFTNKPNKGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTIFALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHEEHHCCCCCCCCCEEEEECCCEEEEEEECCCCCHHEEE
MRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPIKNLNACERMKP
EHHHCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNAAFPSVLKEIPNASIHPICLETYDEIAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEYLEKDFEHELGLIVEQGQEINKDGRVTVYVTKGIENEKLQIDIAGTAVYVKEFEVLI
HHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC
>Mature Secondary Structure
MKTINVFHYDAFTNKPNKGNPAGIVLEADGLTEEEMQIIAEKVGYNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTIFALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHEEHHCCCCCCCCCEEEEECCCEEEEEEECCCCCHHEEE
MRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPIKNLNACERMKP
EHHHCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNAAFPSVLKEIPNASIHPICLETYDEIAQMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEYLEKDFEHELGLIVEQGQEINKDGRVTVYVTKGIENEKLQIDIAGTAVYVKEFEVLI
HHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]