Click here to switch to the map view.

The map label for this gene is ydeD [H]

Identifier: 218231102

GI number: 218231102

Start: 1681043

End: 1682008

Strand: Reverse

Name: ydeD [H]

Synonym: BCB4264_A1774

Alternate gene names: 218231102

Gene position: 1682008-1681043 (Counterclockwise)

Preceding gene: 218235691

Following gene: 218232417

Centisome position: 31.04

GC content: 34.58

Gene sequence:

>966_bases
ATGGATTCAAATCGATTAAAAGGAATTATAATGGTCATAATCGGTGCTTGTTTATGGGGCTTGTCTGGTACAGCTGCACA
ACAACTTTTTCAATATGACAATGTTTCAACCGAATGGTTAGTTACGATCCGTTTACTTATATCTGGAATTATTTTGCTCA
TTATTTCCTCATTCGGAACGAGAAAAAAAGAGATATTTGGCATTTGGAAACAAAAATCTGATGCTATTAAAATAATTTTG
TTTGGTCTATTCGGTATGCTTGCTGTACAGTATACGTATTTCGCTTCAATTAAAGAAGGAAATGCTGCCGTGGCAACATT
ATTACAATATTTAGCTCCTATATTCATCACTGTATACTTACTTTTCAAATGGAACGTTCGTCCATCAAAAATTGATTTCA
TTTCAATTACCCTTTCATTAGTAGGTACTTTTCTCTTACTAACAAACGGGTCTATTCATAACTTGGCTGTTTCTACACCG
GCTATTATTTGGGGGATTTTATCTGGATTATCTCTCGCTTTTTATAGTCTATATTCAAAGGGATTACTAGAAAGATGGTC
TTCCTCTGTTATCGTTGGATGGGGCATGATTATTGGGGGTATTGGGGTAACGATTCTACACTTTATTACTACAAATGAAT
TCATTTTATTATCAACTATGAAATATGTAAAACTAAGTACCCTACCGCTCATCACATTTGTCGTCATTTTCGGGACACTT
ATTGCCTTTTATTTATACTTAGACAGCATACGATACCTGACTCCGAAAGAAACAACATTATTTGGTTGCACAGAACCACT
CGCAGCTATTATTTCTTCTGTACTTATATTGCACGTGCCATTTCAATCTTTTCAGTTATTAGGCGCTTTTTGTGTCATTG
TAATGGTGCTCATCTTAAGCCAAAAGCCGGATGAAGGGAAACAAAAATTAAAGCTTGTTCATGCAAAAAAGGAAAATATA
CAATGA

Upstream 100 bases:

>100_bases
AAAAATAAAATTAGAAATTTCAGTTTATTAACGAGTCATTCTGTGATATATTGCATATTGTATTCAATTTGTATTTTTAG
AAAGGAGAACTTTAGATCAT

Downstream 100 bases:

>100_bases
AAGGATTGAATTCACTATGCCTGTCCCTCAAAATTATAAAAAACCAGGAAGAATTTCAGCAAAATCACTCGTTTTAAATC
AACTACAAAATTGGATTATT

Product: transporter, EamA family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MDSNRLKGIIMVIIGACLWGLSGTAAQQLFQYDNVSTEWLVTIRLLISGIILLIISSFGTRKKEIFGIWKQKSDAIKIIL
FGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYLLFKWNVRPSKIDFISITLSLVGTFLLLTNGSIHNLAVSTP
AIIWGILSGLSLAFYSLYSKGLLERWSSSVIVGWGMIIGGIGVTILHFITTNEFILLSTMKYVKLSTLPLITFVVIFGTL
IAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILSQKPDEGKQKLKLVHAKKENI
Q

Sequences:

>Translated_321_residues
MDSNRLKGIIMVIIGACLWGLSGTAAQQLFQYDNVSTEWLVTIRLLISGIILLIISSFGTRKKEIFGIWKQKSDAIKIIL
FGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYLLFKWNVRPSKIDFISITLSLVGTFLLLTNGSIHNLAVSTP
AIIWGILSGLSLAFYSLYSKGLLERWSSSVIVGWGMIIGGIGVTILHFITTNEFILLSTMKYVKLSTLPLITFVVIFGTL
IAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILSQKPDEGKQKLKLVHAKKENI
Q
>Mature_321_residues
MDSNRLKGIIMVIIGACLWGLSGTAAQQLFQYDNVSTEWLVTIRLLISGIILLIISSFGTRKKEIFGIWKQKSDAIKIIL
FGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYLLFKWNVRPSKIDFISITLSLVGTFLLLTNGSIHNLAVSTP
AIIWGILSGLSLAFYSLYSKGLLERWSSSVIVGWGMIIGGIGVTILHFITTNEFILLSTMKYVKLSTLPLITFVVIFGTL
IAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILSQKPDEGKQKLKLVHAKKENI
Q

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=311, Percent_Identity=33.4405144694534, Blast_Score=162, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 35633; Mature: 35633

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNRLKGIIMVIIGACLWGLSGTAAQQLFQYDNVSTEWLVTIRLLISGIILLIISSFGT
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
RKKEIFGIWKQKSDAIKIILFGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYL
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LFKWNVRPSKIDFISITLSLVGTFLLLTNGSIHNLAVSTPAIIWGILSGLSLAFYSLYSK
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
GLLERWSSSVIVGWGMIIGGIGVTILHFITTNEFILLSTMKYVKLSTLPLITFVVIFGTL
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
IAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILS
HHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
QKPDEGKQKLKLVHAKKENIQ
CCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDSNRLKGIIMVIIGACLWGLSGTAAQQLFQYDNVSTEWLVTIRLLISGIILLIISSFGT
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
RKKEIFGIWKQKSDAIKIILFGLFGMLAVQYTYFASIKEGNAAVATLLQYLAPIFITVYL
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LFKWNVRPSKIDFISITLSLVGTFLLLTNGSIHNLAVSTPAIIWGILSGLSLAFYSLYSK
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
GLLERWSSSVIVGWGMIIGGIGVTILHFITTNEFILLSTMKYVKLSTLPLITFVVIFGTL
HHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
IAFYLYLDSIRYLTPKETTLFGCTEPLAAIISSVLILHVPFQSFQLLGAFCVIVMVLILS
HHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
QKPDEGKQKLKLVHAKKENIQ
CCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]