Click here to switch to the map view.

The map label for this gene is ydfH [H]

Identifier: 218232417

GI number: 218232417

Start: 1680355

End: 1681026

Strand: Reverse

Name: ydfH [H]

Synonym: BCB4264_A1773

Alternate gene names: 218232417

Gene position: 1681026-1680355 (Counterclockwise)

Preceding gene: 218231102

Following gene: 218235371

Centisome position: 31.02

GC content: 33.63

Gene sequence:

>672_bases
ATGCCTGTCCCTCAAAATTATAAAAAACCAGGAAGAATTTCAGCAAAATCACTCGTTTTAAATCAACTACAAAATTGGAT
TATTGAAGGTGTACTGAAGCCCAATGAAAAAATTAATGATGGGGAATTGGCTGAGGCACTAGGAGTAAGCAGAACACCTG
TAAGAGAAGCACTTCAAATATTAGAGCTTTCTGGATTAGTGGAAATGGTACCAGGGCAAAAAACGAAAATTGCTCCTATT
AAGTTAGACGACGTATCTATCATTTATGAAACGATGGCTGGTCTTCACTCTATTATAGGAAAGCAAGCTCTTCACAACAT
TACAGACGCTGATATTCAACTACTTTCTGAAATAAATGATCATTTTCAGCACTCTATAGAGAAAAAAAACGCAAAACAAG
CTTTAGAATTAGATATACAATTCCACAATACAATTTCTTCTATTGCTAAAAACCAATATATTGAACCCTTTTTAGAAAAT
ATGCAACTTCACGTTTTACGTCTTGAATATTTGTTTTTCCAAAACTTTGTTCCAGCAAGACAATCTATTGAAGAACATCA
CTCTATCATTCAAGCATTACAGAAGCAGGACGAAAAACAAATGGAACAAATAATGACCCAAAACTGGCTCCGTCCCATGA
AAGAAATACAAAAAATAATTTCTACGAAATAA

Upstream 100 bases:

>100_bases
ATGGTGCTCATCTTAAGCCAAAAGCCGGATGAAGGGAAACAAAAATTAAAGCTTGTTCATGCAAAAAAGGAAAATATACA
ATGAAAGGATTGAATTCACT

Downstream 100 bases:

>100_bases
AAGGAGAGCTGGTTACACAAAATCGTAACCAGCTCTCCTTTGACTAATCTATATAGCTATGCCTGAACATTTGCATAATC
TTCCATATCTTCGTACTCTT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MPVPQNYKKPGRISAKSLVLNQLQNWIIEGVLKPNEKINDGELAEALGVSRTPVREALQILELSGLVEMVPGQKTKIAPI
KLDDVSIIYETMAGLHSIIGKQALHNITDADIQLLSEINDHFQHSIEKKNAKQALELDIQFHNTISSIAKNQYIEPFLEN
MQLHVLRLEYLFFQNFVPARQSIEEHHSIIQALQKQDEKQMEQIMTQNWLRPMKEIQKIISTK

Sequences:

>Translated_223_residues
MPVPQNYKKPGRISAKSLVLNQLQNWIIEGVLKPNEKINDGELAEALGVSRTPVREALQILELSGLVEMVPGQKTKIAPI
KLDDVSIIYETMAGLHSIIGKQALHNITDADIQLLSEINDHFQHSIEKKNAKQALELDIQFHNTISSIAKNQYIEPFLEN
MQLHVLRLEYLFFQNFVPARQSIEEHHSIIQALQKQDEKQMEQIMTQNWLRPMKEIQKIISTK
>Mature_222_residues
PVPQNYKKPGRISAKSLVLNQLQNWIIEGVLKPNEKINDGELAEALGVSRTPVREALQILELSGLVEMVPGQKTKIAPIK
LDDVSIIYETMAGLHSIIGKQALHNITDADIQLLSEINDHFQHSIEKKNAKQALELDIQFHNTISSIAKNQYIEPFLENM
QLHVLRLEYLFFQNFVPARQSIEEHHSIIQALQKQDEKQMEQIMTQNWLRPMKEIQKIISTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=187, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25575; Mature: 25444

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVPQNYKKPGRISAKSLVLNQLQNWIIEGVLKPNEKINDGELAEALGVSRTPVREALQI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
LELSGLVEMVPGQKTKIAPIKLDDVSIIYETMAGLHSIIGKQALHNITDADIQLLSEIND
HHHHHHHHHCCCCCCEECCEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HFQHSIEKKNAKQALELDIQFHNTISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QSIEEHHSIIQALQKQDEKQMEQIMTQNWLRPMKEIQKIISTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVPQNYKKPGRISAKSLVLNQLQNWIIEGVLKPNEKINDGELAEALGVSRTPVREALQI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
LELSGLVEMVPGQKTKIAPIKLDDVSIIYETMAGLHSIIGKQALHNITDADIQLLSEIND
HHHHHHHHHCCCCCCEECCEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HFQHSIEKKNAKQALELDIQFHNTISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QSIEEHHSIIQALQKQDEKQMEQIMTQNWLRPMKEIQKIISTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]