Click here to switch to the map view.

The map label for this gene is nirD [H]

Identifier: 218230850

GI number: 218230850

Start: 2054133

End: 2054450

Strand: Reverse

Name: nirD [H]

Synonym: BCB4264_A2151

Alternate gene names: 218230850

Gene position: 2054450-2054133 (Counterclockwise)

Preceding gene: 218231277

Following gene: 218232842

Centisome position: 37.91

GC content: 38.05

Gene sequence:

>318_bases
ATGATACAAACGAAAGAAAAAATAAAAGTTATGCGTGCGGAAGATCTTGCTATTCAAATCGGTAAAGAAGTGCAAATGAA
AGGTATGTCTATCGCCCTATTCCGCCTTTCAAATGGCGATATTCGAGCTGTAGAAAATCGTTGTCCTCATAAAAACGGAC
CGTTAGCAGAAGGGATTGTGTCTGGAGAATTCGTCTTTTGTCCACTGCATGATTGGAAAATCTCACTACTAACAGGTGAA
GTTCAAAAACCTGATGACGGCTGTATTCAAACATACGAAGTAGAAGTTATTGACGGTGACATTTATTTATACATGTAA

Upstream 100 bases:

>100_bases
TCGTAGAACATATACGGAAGCATGGGGACAAGCACTAGAAACGAAATCATTAAAAGCGATGTATGAAGTAGAAACTGTGA
AATAAGGAGCTGTGATCTAA

Downstream 100 bases:

>100_bases
TTTTCGAAAGGAAGCCTCCTCTGGCTTCCTTTTAAATAAAAATTGATGAGGTGCAATTATGAACGGATATGTATATTTAG
TTGGTGCAGGACCAGGTGAT

Product: nitrite reductase [NAD(P)H], small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MIQTKEKIKVMRAEDLAIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIVSGEFVFCPLHDWKISLLTGE
VQKPDDGCIQTYEVEVIDGDIYLYM

Sequences:

>Translated_105_residues
MIQTKEKIKVMRAEDLAIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIVSGEFVFCPLHDWKISLLTGE
VQKPDDGCIQTYEVEVIDGDIYLYM
>Mature_105_residues
MIQTKEKIKVMRAEDLAIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIVSGEFVFCPLHDWKISLLTGE
VQKPDDGCIQTYEVEVIDGDIYLYM

Specific function: Required for nitrite assimilation. Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 11828; Mature: 11828

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQTKEKIKVMRAEDLAIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIV
CCCCCHHEEEEECCCEEEEECCCEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCEE
SGEFVFCPLHDWKISLLTGEVQKPDDGCIQTYEVEVIDGDIYLYM
CCCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEECEEEEEC
>Mature Secondary Structure
MIQTKEKIKVMRAEDLAIQIGKEVQMKGMSIALFRLSNGDIRAVENRCPHKNGPLAEGIV
CCCCCHHEEEEECCCEEEEECCCEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCEE
SGEFVFCPLHDWKISLLTGEVQKPDDGCIQTYEVEVIDGDIYLYM
CCCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7868621; 8969502; 9384377 [H]