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The map label for this gene is yfkR [H]

Identifier: 218230843

GI number: 218230843

Start: 2989610

End: 2990689

Strand: Reverse

Name: yfkR [H]

Synonym: BCB4264_A3119

Alternate gene names: 218230843

Gene position: 2990689-2989610 (Counterclockwise)

Preceding gene: 218234221

Following gene: 218231106

Centisome position: 55.19

GC content: 32.31

Gene sequence:

>1080_bases
ATGAAGCGATGGATACTTTTCCTTATAGTAAGTGTCTTCTTAATAGGTTGTGCTAAAACGAAAATTGTGGATGACATTGA
CTTAGTTCAAGTTGCGGCATATGATACCGAAGCAAAAGGTAAGCTAAAAGGAACCTTTGCGATTTCAGCTTATAAAGGAG
GCGGGGAAGGTGAAACGAAAATCTATTCAGCATCAGGCCAGACTGGTAGAGAAGTTCTTGCAAGAGCATCCGAAAAGTCT
TCTGGACCTCTAGAGTTGGGGCAATTGCGTGTTATTATATTTAATGAAAAAATAATTGAAAAGGGAATGCAGGAAATTTT
AGAGACTTTGAATCGAAATCCTAGTGTAGGAAATGCAATTTATTTAGCAATTACAAATGTAAAAGGGGAATCATTATTAA
AGGGGAACTATTCTAAAGAAAAAGAAATTGCTTCCTATCTATCCTCTTTACTGGAGCAAAATATGGACAATGGAACGCAA
CCAAAAACAAATTTTTTTATGTTTTTAAACCAACTTAATGATGATGCGAGAGATTCATATTTACCGATGATATCTAAAAA
AGGTAACGTGTTGGAGTTAGATGGAATAGCACTTTTTAAAAGATGTAAAATGGTTGATAAAGTGAATCCTAAAGATTTAT
TTGTATTTAAATTGTTGACAGATAATTTTAAACAAGGTACATACCAATTCAAGCTACCTGGTTCTTCAAATACGTACGCC
ACGATAGAGAATATAAAGGCTAGAACAAAATATAAGATGGAAGGGAATAGTAAGCATCCATTCGTAAATGCTCATATTCA
AGTTAAAGCTGAAATTCAAGAATTTACAAAAACAAAAAATCTAGATAATCCTAAAGAAATAAAAAAATTAGAAAAAATTA
TGGAAAAAGAAATAGAAAAAAAAGCAACTACATTGATAAAGAGATTTATTAAAAAAGACACAGATCCTATAGGACTTAGA
AAGCTTGGTAGAACTCACGTAAGAAAATGGAACAGTCAAGAATGGGAAGAATCCTATAAACATTTACGTTTTCGTGTAAC
AGCTGATGTAAAAGTAACCCAATCTGGTGTTACAGAATAA

Upstream 100 bases:

>100_bases
TAAATACTTGGACAGGTCAAATTGGCTTTGTATATATATATGTATACCTACCTATATTATGGCTAATTCAAACCGCCAAA
ATAAAGTTAAGGAGATAAAC

Downstream 100 bases:

>100_bases
ATCAAATAAGATATGGTAAATTTCAACAAAAAAATATAGTCTCGCAGGAGATTAGGGAGAAGAGAAACGATTAACAAAGA
ATTTCATAAACATTAAGATG

Product: spore germination protein, GerC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETKIYSASGQTGREVLARASEKS
SGPLELGQLRVIIFNEKIIEKGMQEILETLNRNPSVGNAIYLAITNVKGESLLKGNYSKEKEIASYLSSLLEQNMDNGTQ
PKTNFFMFLNQLNDDARDSYLPMISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEKKATTLIKRFIKKDTDPIGLR
KLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE

Sequences:

>Translated_359_residues
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETKIYSASGQTGREVLARASEKS
SGPLELGQLRVIIFNEKIIEKGMQEILETLNRNPSVGNAIYLAITNVKGESLLKGNYSKEKEIASYLSSLLEQNMDNGTQ
PKTNFFMFLNQLNDDARDSYLPMISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEKKATTLIKRFIKKDTDPIGLR
KLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE
>Mature_359_residues
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETKIYSASGQTGREVLARASEKS
SGPLELGQLRVIIFNEKIIEKGMQEILETLNRNPSVGNAIYLAITNVKGESLLKGNYSKEKEIASYLSSLLEQNMDNGTQ
PKTNFFMFLNQLNDDARDSYLPMISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEKKATTLIKRFIKKDTDPIGLR
KLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 40724; Mature: 40724

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETK
CCHHHHHHHHHHHHHHCCHHHHCCCCHHEEEEECCCCCCCCEEEEEEEEEECCCCCCCCE
IYSASGQTGREVLARASEKSSGPLELGQLRVIIFNEKIIEKGMQEILETLNRNPSVGNAI
EEECCCCHHHHHHHHHCCCCCCCEEECEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEE
YLAITNVKGESLLKGNYSKEKEIASYLSSLLEQNMDNGTQPKTNFFMFLNQLNDDARDSY
EEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHH
LPMISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
CCHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEEECCCCCCCEE
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEK
EHHHHHHHEEEEECCCCCCCEEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KATTLIKRFIKKDTDPIGLRKLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHEEEEEEECEEECCCCCCC
>Mature Secondary Structure
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETK
CCHHHHHHHHHHHHHHCCHHHHCCCCHHEEEEECCCCCCCCEEEEEEEEEECCCCCCCCE
IYSASGQTGREVLARASEKSSGPLELGQLRVIIFNEKIIEKGMQEILETLNRNPSVGNAI
EEECCCCHHHHHHHHHCCCCCCCEEECEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEE
YLAITNVKGESLLKGNYSKEKEIASYLSSLLEQNMDNGTQPKTNFFMFLNQLNDDARDSY
EEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHH
LPMISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
CCHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEEECCCCCCCEE
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEK
EHHHHHHHEEEEECCCCCCCEEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KATTLIKRFIKKDTDPIGLRKLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHEEEEEEECEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]