Click here to switch to the map view.

The map label for this gene is yjfH [C]

Identifier: 213693319

GI number: 213693319

Start: 2797999

End: 2799000

Strand: Direct

Name: yjfH [C]

Synonym: Blon_2473

Alternate gene names: 213693319

Gene position: 2797999-2799000 (Clockwise)

Preceding gene: 213693313

Following gene: 213693327

Centisome position: 98.77

GC content: 61.88

Gene sequence:

>1002_bases
ATGGCATCTATGGCTAACAAAAAAGGACCGACCAAGGGGTCGGGTGGCAAGCATCGCAACAAACTGAAGGGTTACGGCCC
CACTCCCAAGGCCGAGGACCGCGTCTATCACAAGGCGTACAAGGCCAAGAAAGTGGCCGAACGTCGGCAGATGGCCGACC
CGCGTCTGGCAGCCCGCCGTCGAGTGGACAAGTTCGCTTCGGCGGACACCTCGGATCTGGTGTACGGCCGTAATTCCGTG
CTGGAAGCACTGCGCGTAGGCGTACCTTCTTCTACGCTGTACATCATGTCGCGCATCGAGCATGACGATCGTACTCGCGA
AATCGTGAAGATCGCCGGTATGAACGGCCTGCACATGCTGGAGGCCGATCGTCTGGAGATGGATCGTATCGCCCGCTCCG
GCAACCATCAGGGCGTGATTCTGAAGGTCGATCCGTTCCAGTACTCCTCGCTGAACGAGCTGGCCGATCGTGCCGAGAAG
AAGGCCAAGGCAATGGAGGCCGCGAATTCGGCGGCCGCCCGCATCGCCGCCCGCCCGCTGTTCATTGCATTGGACGGCGT
GACCGATCCGCAGAACCTGGGTGCCGTGATTCGTTCGGCGGCCGCATTCGGTGCCAATGGTGTGATTCTGCCGGAACGCC
GTTCCGCTTCAGTGAACGCCGCCGCCTGGAAGGTGTCTGCCGGTGCGGCCGCGCATATGCCGGTGGCGCGCGTGGTGAAC
CTGACTAAGGCACTTGAGGGCTTGAAGGAGCGTGGATACTACGTTGTCGGCCTTGACGGTGGCGGCGATAAGCTCGTCGG
TGAGACCGGCTTTGAATCCGATCCGCTCGTTGTAGTGCTCGGTTCGGAAGGCAGCGGTTTGGGCCGACTGGTGCGCGAAA
CCTGCGACGCGATTGCCGGCATCCCGATCAGCTCGTCTGTTGAGTCGCTGAACGCTTCAGTAGCGGCGGGTATCAGCCTG
TACGCGGTGTCCAACGCACGACGCAAGGCTGCGGCGGAGTGA

Upstream 100 bases:

>100_bases
GCGGGGATAGTCCGAATATCATGCGTTGCTTCTTCACTCCCAATACCTTACCGGCTTCCGATGGCGGAATGGCCGTGTCT
TGGCGCGGGGTGCTGGGACA

Downstream 100 bases:

>100_bases
TTGTCGCTTGAGACCGTAATAGGTTGTACATACACGGAAGCCCCTCTATTTGAGGGGCTTCTTTGTGTGATGGGCTCACC
TACAGACAGTCCATTGGATT

Product: RNA methyltransferase, TrmH family, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MASMANKKGPTKGSGGKHRNKLKGYGPTPKAEDRVYHKAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSV
LEALRVGVPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEK
KAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVN
LTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISL
YAVSNARRKAAAE

Sequences:

>Translated_333_residues
MASMANKKGPTKGSGGKHRNKLKGYGPTPKAEDRVYHKAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSV
LEALRVGVPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEK
KAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVN
LTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISL
YAVSNARRKAAAE
>Mature_332_residues
ASMANKKGPTKGSGGKHRNKLKGYGPTPKAEDRVYHKAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVL
EALRVGVPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEKK
AKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNL
TKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLY
AVSNARRKAAAE

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=292, Percent_Identity=28.0821917808219, Blast_Score=104, Evalue=9e-23,
Organism=Escherichia coli, GI1790623, Length=255, Percent_Identity=36.4705882352941, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788935, Length=274, Percent_Identity=24.0875912408759, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17555908, Length=314, Percent_Identity=28.343949044586, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 35334; Mature: 35203

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASMANKKGPTKGSGGKHRNKLKGYGPTPKAEDRVYHKAYKAKKVAERRQMADPRLAARR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RVDKFASADTSDLVYGRNSVLEALRVGVPSSTLYIMSRIEHDDRTREIVKIAGMNGLHML
HHHHHHCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCEEH
EADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEKKAKAMEAANSAAARIAARPL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
FIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVN
EEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCCHHCHHHHHHH
LTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAG
HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
IPISSSVESLNASVAAGISLYAVSNARRKAAAE
CCCCHHHHHHHHHHHHCEEEEEECCHHHHHCCC
>Mature Secondary Structure 
ASMANKKGPTKGSGGKHRNKLKGYGPTPKAEDRVYHKAYKAKKVAERRQMADPRLAARR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RVDKFASADTSDLVYGRNSVLEALRVGVPSSTLYIMSRIEHDDRTREIVKIAGMNGLHML
HHHHHHCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCEEH
EADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEKKAKAMEAANSAAARIAARPL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
FIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVN
EEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCCHHCHHHHHHH
LTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAG
HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
IPISSSVESLNASVAAGISLYAVSNARRKAAAE
CCCCHHHHHHHHHHHHCEEEEEECCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA