| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213693140
Identifier: 213693140
GI number: 213693140
Start: 2536621
End: 2537481
Strand: Direct
Name: 213693140
Synonym: Blon_2290
Alternate gene names: NA
Gene position: 2536621-2537481 (Clockwise)
Preceding gene: 213693139
Following gene: 213693154
Centisome position: 89.55
GC content: 64.23
Gene sequence:
>861_bases ATGTCAGATTTTCTCGAACTTCTCGCTGCCGACGTTGCCGATTCGTCCGGTGCATCCGGTACGCCCAGTGCGCCCGATTC ATCCGGTTCGACCGCACCCGGCATCGCCGCGACCAACCGCGTACGCACCGTGCTGTTCGAGTGCCTGTTCAATCATCTGG CCGACGAACGAGTGGAGTCCTTGTTCACCATCCTCGGCTTCGAGCATGACTTCGATTGTTACGCCATCGCCGGATACCCT GCCCGGTCCGCCGCACGTACGGCCAAGGAAATCGAGAAAATCGTGGCCGATTTCGGCGGTGTGTGTCTGACCGCCAAGCG CCCGATCGGCAACAGCACCGCCGTAGTGGCGTTGATTCGTCCGGTCGGTGCGGCCACGCCAGAAATCATCTGCAATACCA TAGCCCCGTCGTTCGCCGCCGATCGGCCAATCGCCTTGGGCCCGCAGCGCACCGGTGCCGATGGCGCGATGCGTTCGATT CAGGCCACGCTCTACTGTCTTCAGGCCGCGCCGGCTCTGGCCGCCACCGTGCAGCCATTGCCGCGCCCGTTACGCACCGA CGACGCCCTGCCCGAACGCGCGTTGATCGGCGACGCGGACGCCCGTGACGAACTGGTCCGCGTGGTCTACGGAAGCCTGA CCGCAGCGGGCCCGGACGATCCGACGCTGCTCACCGTCTCCACATTCTTGAAGTTCGGTGGTTCGCTCGAAACCACGGCC AAGGAACTCAACGTACATCCCAATACGATTCGCTACCGTTTGAAGCGCGCCGCCGAATCCACCGGCTGGGATGCCACCGA CCCGCGCGAGGCGTACGTGCTGATCACCGCCATCGCGCTGGGTCGTGTGGCCGAAGCGTAG
Upstream 100 bases:
>100_bases TGTTGCCGGTTGCGTTTGTATTCGGATTCGTGGTGCTGACGTATTGGCGAGAGTCTTTGGCTGAAAGGCAACGCCAATCA GCGACGCTACACTAGTGACT
Downstream 100 bases:
>100_bases TCGGGCAGAAGCATAACCAGCAGAACCGTAGCCGGCAAAGGCCATAGCTGACCGGACATAACCGTCCAGCCCGACAGCCT AGCGGGCCGAATCAGGCTGC
Product: narrowly conserved hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MSDFLELLAADVADSSGASGTPSAPDSSGSTAPGIAATNRVRTVLFECLFNHLADERVESLFTILGFEHDFDCYAIAGYP ARSAARTAKEIEKIVADFGGVCLTAKRPIGNSTAVVALIRPVGAATPEIICNTIAPSFAADRPIALGPQRTGADGAMRSI QATLYCLQAAPALAATVQPLPRPLRTDDALPERALIGDADARDELVRVVYGSLTAAGPDDPTLLTVSTFLKFGGSLETTA KELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRVAEA
Sequences:
>Translated_286_residues MSDFLELLAADVADSSGASGTPSAPDSSGSTAPGIAATNRVRTVLFECLFNHLADERVESLFTILGFEHDFDCYAIAGYP ARSAARTAKEIEKIVADFGGVCLTAKRPIGNSTAVVALIRPVGAATPEIICNTIAPSFAADRPIALGPQRTGADGAMRSI QATLYCLQAAPALAATVQPLPRPLRTDDALPERALIGDADARDELVRVVYGSLTAAGPDDPTLLTVSTFLKFGGSLETTA KELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRVAEA >Mature_285_residues SDFLELLAADVADSSGASGTPSAPDSSGSTAPGIAATNRVRTVLFECLFNHLADERVESLFTILGFEHDFDCYAIAGYPA RSAARTAKEIEKIVADFGGVCLTAKRPIGNSTAVVALIRPVGAATPEIICNTIAPSFAADRPIALGPQRTGADGAMRSIQ ATLYCLQAAPALAATVQPLPRPLRTDDALPERALIGDADARDELVRVVYGSLTAAGPDDPTLLTVSTFLKFGGSLETTAK ELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRVAEA
Specific function: Unknown
COG id: COG2508
COG function: function code TQ; Regulator of polyketide synthase expression
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CdaR family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30027; Mature: 29896
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFLELLAADVADSSGASGTPSAPDSSGSTAPGIAATNRVRTVLFECLFNHLADERVES CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LFTILGFEHDFDCYAIAGYPARSAARTAKEIEKIVADFGGVCLTAKRPIGNSTAVVALIR HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEH PVGAATPEIICNTIAPSFAADRPIALGPQRTGADGAMRSIQATLYCLQAAPALAATVQPL HCCCCCHHHHHHHHCCCHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC PRPLRTDDALPERALIGDADARDELVRVVYGSLTAAGPDDPTLLTVSTFLKFGGSLETTA CCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHCCCHHHHH KELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRVAEA HHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDFLELLAADVADSSGASGTPSAPDSSGSTAPGIAATNRVRTVLFECLFNHLADERVES HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LFTILGFEHDFDCYAIAGYPARSAARTAKEIEKIVADFGGVCLTAKRPIGNSTAVVALIR HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEH PVGAATPEIICNTIAPSFAADRPIALGPQRTGADGAMRSIQATLYCLQAAPALAATVQPL HCCCCCHHHHHHHHCCCHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC PRPLRTDDALPERALIGDADARDELVRVVYGSLTAAGPDDPTLLTVSTFLKFGGSLETTA CCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHCCCHHHHH KELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRVAEA HHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]