| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is glgX [H]
Identifier: 213693094
GI number: 213693094
Start: 2474497
End: 2477037
Strand: Direct
Name: glgX [H]
Synonym: Blon_2243
Alternate gene names: 213693094
Gene position: 2474497-2477037 (Clockwise)
Preceding gene: 213693093
Following gene: 213693101
Centisome position: 87.35
GC content: 59.82
Gene sequence:
>2541_bases ATGAAAAACCCACCGTTGCATCGTTACGCCACTCGCCCAGGGCTGTACTTCACTGACGACGGTGGGGCTGACGCCGTTGT TCGTTCCGAAACCGCCGATCAGGTTTGGCTATGCGTACTGGAGCCCATTGATGAGCCCGGCGCTTTCTTCCAAGACGCCA TCCGCCTGTTCGAGGACCCGAATATCTCCTTTATCCAGCAGATTCATGAGTTCCCGGTATGCACGCGCATTATCGAACAT TTGTATCTGCGCGAGACCCTGTTCCGCATGACCGGGCCGAACTACGGCCTGTGGTACGTGCACCTGCCCAAAGCATGGGA CGGCATGCGTTATGGCTACCGCGTGGACGGCGCATGGGACCCGAAACACGGCGTGCGCTTCAATCCATACAAATTCCTGC TTGACCCGTATGGCAAGGGCATCGACGGCTCCATGGAGCTCACCCCCGCCGCCTTCTCCTATGAATGCGATGTCGTGGAC CGCAAGGTAATCGGCTCGGCATACGGTGCCATGAGCACCGTAGACTCGCTCGGCCATGCGCCGGTGTCCGTGGCCATCGA CGATCGCGACATCCACAAGCACGAGGCCGATCCGCAGCACCCGCATGTGCCGTGGCGCAAAACCGTCATCTATGAGATGC ACGTCAAAGGCTTCACCGCCAACGCACCGTGGCTGCCCGAATCATTGCGCGGCACATACGCCGGACTCGCCCACCCCACC ACGCTCGCCTATCTGCAGGGTCTAGGCATCACATCCATCGAACTGCTGCCGATTATGGCCAAGCAGGACGAGCTCTTCCT GCAAGAACACGGCCGCAAGAACTACTGGGGCTACTCCACTCTCAGCTACTTCGCCCCCGAACCCTCCTACGCCACTAAAG CCGCCCAGGAGAAGGGCGCGGCCGCCGTGCGCCAAGAAGTCATAGACATGGTGCGCGCACTGCACGAGGCCGGCTTCGAA GTCATCATGGACGTGGTCTACAACCACACATGCGAAGGCGGCGTCGAAGGCCCGACGGTCTGCTGGCGCGGCCTCGACGA CCTGGCCTACTATCGCCATCAAAAATCCAATACCGGTCGACTCGAAGACACCACTGGTTGCGGCAATACGCTGGATTTCA CCAACACGCATGTGGCCACCTTTGCCATCGACTCATTACGATACTGGGCCAAGCGTATCGGCATAGACGGTTTCCGCTTC GACCTTGGCGTCTCGCTGGCCCGTCTGGAAGGCGAATTCACCCATCATCACCCGTTCCTCTACGCCCTGCGTTCCGATCT GCTGCTGGGCAACCTGAAGCTCATTATGGAGCCGTGGGATCTGGGCAACCTCGGCTGGCGCACCGGCCAATTCTCCGTGC CGTTCGCCGAATGGAATGACCGCTTCCGCGACACGGCCCGCACCTTCTGGCTTGAAGATGTGGACGGCGGCTCCGATTTC GGGCGTATCAGTTTGCAGGAGATGGCCACACGACTCTGCGGCTCGGCCGATCTGTTCGCCACCGAACCAGGGCGTGGCGC TCCGGCCTCCATCAATTTCGTGTCCTGCCACGACGGTTTCACGCTGACGGACCTCACCAGATACCGCTCCAAGCACAATG AAGCCAACGGCGAAAACAATAATGATGGCTCATCGGTGAACCATTCCGCCAATTTCGGCGTCGAAGGCGTCACCGATGAT CCAGACGTCATCACGGCACGCGAACAGGCGGCCATGAACATGATCGGCATGCTGCTGCTCTCGCTGGGTACGCCGATGAT GCTCGCCGGCGACGAATTCCGCAACACACAGGACGGCAACAACAACGCCTACTGCCAAGACAACGACATCACGTGGCTGA AGTGGGATTGGATGTATTCCACCAACAAGACACGCGAGATGCGCCGCTTGAAAACCGTGTCTCGACTGGTGGCGCTGCGT AAATCACTGGACCTGTATCACCACGAGGATTTCTTCACCCGACTGACGCAGCTCGGCCTGCTCAAGCCCTCAAGCCGCGT GCAGTGGTTCCTGCCCGACGGCACCACGCCGATGGAGCGTGACTGGTTCGATTTGGGCGTACGTAGCTTCACCATGCGAT TGCTGTCCAACAGTGAGGTGGACGTGTGCATTGTGGTCAACGGCACCGCTGATGACCGCGCATTCCGCCTGCCGCCAGAC ACTCACTGGACGCCTAAATGGTGCTCGGCCGAAATCAACGGCCGCCGAGCCGGGCATGGCACTCAGGTCGAGGAATGCGA TTTGAACGGTGACACCGCCGTCCGGACGCAGCATGTACCGAACGCCAGCGAGACAGTACGCAAGCTGGTCGAAGAAATGT CCATGCAGCGTACGGAATCCTCGACTGAGAATGAAGCGGATGCCATCGAATTCGCGATGCCAGTAACGGATCACGCCGCA AACGGCACCTCGTCCGCGCCTCGGGATGAGGTATCAGCTGATATGCCTGATGCCCCTGTGGATGACACGCCGGACACTCC CGTCGACGACAATGTCTGGACCATGCCGGCGCTGAGCATCACGCTGATGAAGCAGGTGTGA
Upstream 100 bases:
>100_bases GGTTCGCCGAGAATTATCTCGACGATATCTGTGGTGCTGTGGAACGCGGCAGGAAATCAAGGGCTTCCACCAAAAGTGAC AACACGTCTACAATGGAGGT
Downstream 100 bases:
>100_bases GTCACACTCAAAACGGCACGACATAAACACAAAGGCTCTCCGTGGAATTCCACGGAGAGCCTTTGTATGCTCGGTACAGG ACAAGCGAAATTAACGCTTG
Product: glycogen debranching enzyme GlgX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MKNPPLHRYATRPGLYFTDDGGADAVVRSETADQVWLCVLEPIDEPGAFFQDAIRLFEDPNISFIQQIHEFPVCTRIIEH LYLRETLFRMTGPNYGLWYVHLPKAWDGMRYGYRVDGAWDPKHGVRFNPYKFLLDPYGKGIDGSMELTPAAFSYECDVVD RKVIGSAYGAMSTVDSLGHAPVSVAIDDRDIHKHEADPQHPHVPWRKTVIYEMHVKGFTANAPWLPESLRGTYAGLAHPT TLAYLQGLGITSIELLPIMAKQDELFLQEHGRKNYWGYSTLSYFAPEPSYATKAAQEKGAAAVRQEVIDMVRALHEAGFE VIMDVVYNHTCEGGVEGPTVCWRGLDDLAYYRHQKSNTGRLEDTTGCGNTLDFTNTHVATFAIDSLRYWAKRIGIDGFRF DLGVSLARLEGEFTHHHPFLYALRSDLLLGNLKLIMEPWDLGNLGWRTGQFSVPFAEWNDRFRDTARTFWLEDVDGGSDF GRISLQEMATRLCGSADLFATEPGRGAPASINFVSCHDGFTLTDLTRYRSKHNEANGENNNDGSSVNHSANFGVEGVTDD PDVITAREQAAMNMIGMLLLSLGTPMMLAGDEFRNTQDGNNNAYCQDNDITWLKWDWMYSTNKTREMRRLKTVSRLVALR KSLDLYHHEDFFTRLTQLGLLKPSSRVQWFLPDGTTPMERDWFDLGVRSFTMRLLSNSEVDVCIVVNGTADDRAFRLPPD THWTPKWCSAEINGRRAGHGTQVEECDLNGDTAVRTQHVPNASETVRKLVEEMSMQRTESSTENEADAIEFAMPVTDHAA NGTSSAPRDEVSADMPDAPVDDTPDTPVDDNVWTMPALSITLMKQV
Sequences:
>Translated_846_residues MKNPPLHRYATRPGLYFTDDGGADAVVRSETADQVWLCVLEPIDEPGAFFQDAIRLFEDPNISFIQQIHEFPVCTRIIEH LYLRETLFRMTGPNYGLWYVHLPKAWDGMRYGYRVDGAWDPKHGVRFNPYKFLLDPYGKGIDGSMELTPAAFSYECDVVD RKVIGSAYGAMSTVDSLGHAPVSVAIDDRDIHKHEADPQHPHVPWRKTVIYEMHVKGFTANAPWLPESLRGTYAGLAHPT TLAYLQGLGITSIELLPIMAKQDELFLQEHGRKNYWGYSTLSYFAPEPSYATKAAQEKGAAAVRQEVIDMVRALHEAGFE VIMDVVYNHTCEGGVEGPTVCWRGLDDLAYYRHQKSNTGRLEDTTGCGNTLDFTNTHVATFAIDSLRYWAKRIGIDGFRF DLGVSLARLEGEFTHHHPFLYALRSDLLLGNLKLIMEPWDLGNLGWRTGQFSVPFAEWNDRFRDTARTFWLEDVDGGSDF GRISLQEMATRLCGSADLFATEPGRGAPASINFVSCHDGFTLTDLTRYRSKHNEANGENNNDGSSVNHSANFGVEGVTDD PDVITAREQAAMNMIGMLLLSLGTPMMLAGDEFRNTQDGNNNAYCQDNDITWLKWDWMYSTNKTREMRRLKTVSRLVALR KSLDLYHHEDFFTRLTQLGLLKPSSRVQWFLPDGTTPMERDWFDLGVRSFTMRLLSNSEVDVCIVVNGTADDRAFRLPPD THWTPKWCSAEINGRRAGHGTQVEECDLNGDTAVRTQHVPNASETVRKLVEEMSMQRTESSTENEADAIEFAMPVTDHAA NGTSSAPRDEVSADMPDAPVDDTPDTPVDDNVWTMPALSITLMKQV >Mature_846_residues MKNPPLHRYATRPGLYFTDDGGADAVVRSETADQVWLCVLEPIDEPGAFFQDAIRLFEDPNISFIQQIHEFPVCTRIIEH LYLRETLFRMTGPNYGLWYVHLPKAWDGMRYGYRVDGAWDPKHGVRFNPYKFLLDPYGKGIDGSMELTPAAFSYECDVVD RKVIGSAYGAMSTVDSLGHAPVSVAIDDRDIHKHEADPQHPHVPWRKTVIYEMHVKGFTANAPWLPESLRGTYAGLAHPT TLAYLQGLGITSIELLPIMAKQDELFLQEHGRKNYWGYSTLSYFAPEPSYATKAAQEKGAAAVRQEVIDMVRALHEAGFE VIMDVVYNHTCEGGVEGPTVCWRGLDDLAYYRHQKSNTGRLEDTTGCGNTLDFTNTHVATFAIDSLRYWAKRIGIDGFRF DLGVSLARLEGEFTHHHPFLYALRSDLLLGNLKLIMEPWDLGNLGWRTGQFSVPFAEWNDRFRDTARTFWLEDVDGGSDF GRISLQEMATRLCGSADLFATEPGRGAPASINFVSCHDGFTLTDLTRYRSKHNEANGENNNDGSSVNHSANFGVEGVTDD PDVITAREQAAMNMIGMLLLSLGTPMMLAGDEFRNTQDGNNNAYCQDNDITWLKWDWMYSTNKTREMRRLKTVSRLVALR KSLDLYHHEDFFTRLTQLGLLKPSSRVQWFLPDGTTPMERDWFDLGVRSFTMRLLSNSEVDVCIVVNGTADDRAFRLPPD THWTPKWCSAEINGRRAGHGTQVEECDLNGDTAVRTQHVPNASETVRKLVEEMSMQRTESSTENEADAIEFAMPVTDHAA NGTSSAPRDEVSADMPDAPVDDTPDTPVDDNVWTMPALSITLMKQV
Specific function: Hydrolyzes The Alpha-1,6-Glucosidic Linkages In Glycogen Which Has First Been Partially Depolymerized By Phosphorylase. Shows Only Very Little Activity With Native Glycogen. [C]
COG id: COG1523
COG function: function code G; Type II secretory pathway, pullulanase PulA and related glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI2367229, Length=532, Percent_Identity=41.3533834586466, Blast_Score=402, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004193 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR011837 - InterPro: IPR013783 - InterPro: IPR014756 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02922 CBM_48 [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 95178; Mature: 95178
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPPLHRYATRPGLYFTDDGGADAVVRSETADQVWLCVLEPIDEPGAFFQDAIRLFEDP CCCCCCCHHHCCCCCEEECCCCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCC NISFIQQIHEFPVCTRIIEHLYLRETLFRMTGPNYGLWYVHLPKAWDGMRYGYRVDGAWD CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCC PKHGVRFNPYKFLLDPYGKGIDGSMELTPAAFSYECDVVDRKVIGSAYGAMSTVDSLGHA CCCCCCCCCCEEEECCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCC PVSVAIDDRDIHKHEADPQHPHVPWRKTVIYEMHVKGFTANAPWLPESLRGTYAGLAHPT CEEEEECCCCCHHCCCCCCCCCCCCCCEEEEEEEECEEECCCCCCCHHHCCCCCCCCCHH TLAYLQGLGITSIELLPIMAKQDELFLQEHGRKNYWGYSTLSYFAPEPSYATKAAQEKGA HHHHHHCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHH AAVRQEVIDMVRALHEAGFEVIMDVVYNHTCEGGVEGPTVCWRGLDDLAYYRHQKSNTGR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCC LEDTTGCGNTLDFTNTHVATFAIDSLRYWAKRIGIDGFRFDLGVSLARLEGEFTHHHPFL CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEHHCCEEEECCCCCCCCCHHH YALRSDLLLGNLKLIMEPWDLGNLGWRTGQFSVPFAEWNDRFRDTARTFWLEDVDGGSDF HHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHEEEEECCCCCCC GRISLQEMATRLCGSADLFATEPGRGAPASINFVSCHDGFTLTDLTRYRSKHNEANGENN CEEEHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC NDGSSVNHSANFGVEGVTDDPDVITAREQAAMNMIGMLLLSLGTPMMLAGDEFRNTQDGN CCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCC NNAYCQDNDITWLKWDWMYSTNKTREMRRLKTVSRLVALRKSLDLYHHEDFFTRLTQLGL CCCEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LKPSSRVQWFLPDGTTPMERDWFDLGVRSFTMRLLSNSEVDVCIVVNGTADDRAFRLPPD CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCC THWTPKWCSAEINGRRAGHGTQVEECDLNGDTAVRTQHVPNASETVRKLVEEMSMQRTES CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC STENEADAIEFAMPVTDHAANGTSSAPRDEVSADMPDAPVDDTPDTPVDDNVWTMPALSI CCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEECCHHEE TLMKQV EEECCC >Mature Secondary Structure MKNPPLHRYATRPGLYFTDDGGADAVVRSETADQVWLCVLEPIDEPGAFFQDAIRLFEDP CCCCCCCHHHCCCCCEEECCCCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCC NISFIQQIHEFPVCTRIIEHLYLRETLFRMTGPNYGLWYVHLPKAWDGMRYGYRVDGAWD CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCC PKHGVRFNPYKFLLDPYGKGIDGSMELTPAAFSYECDVVDRKVIGSAYGAMSTVDSLGHA CCCCCCCCCCEEEECCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCC PVSVAIDDRDIHKHEADPQHPHVPWRKTVIYEMHVKGFTANAPWLPESLRGTYAGLAHPT CEEEEECCCCCHHCCCCCCCCCCCCCCEEEEEEEECEEECCCCCCCHHHCCCCCCCCCHH TLAYLQGLGITSIELLPIMAKQDELFLQEHGRKNYWGYSTLSYFAPEPSYATKAAQEKGA HHHHHHCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHH AAVRQEVIDMVRALHEAGFEVIMDVVYNHTCEGGVEGPTVCWRGLDDLAYYRHQKSNTGR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCC LEDTTGCGNTLDFTNTHVATFAIDSLRYWAKRIGIDGFRFDLGVSLARLEGEFTHHHPFL CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEHHCCEEEECCCCCCCCCHHH YALRSDLLLGNLKLIMEPWDLGNLGWRTGQFSVPFAEWNDRFRDTARTFWLEDVDGGSDF HHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHEEEEECCCCCCC GRISLQEMATRLCGSADLFATEPGRGAPASINFVSCHDGFTLTDLTRYRSKHNEANGENN CEEEHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC NDGSSVNHSANFGVEGVTDDPDVITAREQAAMNMIGMLLLSLGTPMMLAGDEFRNTQDGN CCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCC NNAYCQDNDITWLKWDWMYSTNKTREMRRLKTVSRLVALRKSLDLYHHEDFFTRLTQLGL CCCEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LKPSSRVQWFLPDGTTPMERDWFDLGVRSFTMRLLSNSEVDVCIVVNGTADDRAFRLPPD CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCC THWTPKWCSAEINGRRAGHGTQVEECDLNGDTAVRTQHVPNASETVRKLVEEMSMQRTES CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC STENEADAIEFAMPVTDHAANGTSSAPRDEVSADMPDAPVDDTPDTPVDDNVWTMPALSI CCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEECCHHEE TLMKQV EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Glycosylases; Glycosidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]