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The map label for this gene is yulB [H]

Identifier: 213692920

GI number: 213692920

Start: 2276771

End: 2277574

Strand: Reverse

Name: yulB [H]

Synonym: Blon_2064

Alternate gene names: 213692920

Gene position: 2277574-2276771 (Counterclockwise)

Preceding gene: 213692922

Following gene: 213692919

Centisome position: 80.4

GC content: 59.7

Gene sequence:

>804_bases
ATGATTTCGTCACAACGTCAGCACCTCATCTTGAGCAGGTTGCGCACACGCGGGGCAGTGCGCATTACGGCGCTATCGAA
GGAACTGGGTGTGTCAGCGATGACCATCCGCCGCGATATCGCCGAACTTGCCGACAAGGGACTGCTGAAGCGCGTCCACG
GCGGCGCGGTGACTACCAGTACTTTGCTCAGCGAACCCCTGTTCTCTGTCAAGTCCCAGATGGATATCGGCCTGAAGGGC
GCCATCGCCCAGGAAGCCATCCAATATGTGGCTCCCGGCGACGTAATCGCCATCGGCGGCGGCACCACGGCCTATGTCTT
CGCCCAGCATCTGCTCGAATCGCAGCAGTCCAGCGGCATCACCATCCTCACCAATTCGATTCCCGTGGCCGAGCTGGTCC
AGGCCCTCGAATCCAAGGATGTGGAGGTGATCGTCACCGGTGGCGTGATCACCCGATCGAACTCGCTTGTCGGCCCGATC
GCGGACAAGGTCGTCGCCTCGCTGCGTGTCAACACCGTATTCCTCGGCACCCACTCGGTGTCGATTCCCCGTGGCTTCCT
GATGCCGAATTCGCTGGAAGCCGCAACCGATATGGCGATGATGGACATCGCCGATCGCACCATAGTTTTGACCGATCACA
CCAAGTGGAGCTGCACATCGCTGTCGCTGTTTGCGCGCTTCGACCAAGTGGACACGGTCATTACTGACGACGGGCTCGAC
CCCGACTCCGCCGCCAAAACCAAGGATTTGGTAAAGGAACTCGTGCTGGCCCACCAGAGCGAGACCATTGAGGAAAGTGA
GTAA

Upstream 100 bases:

>100_bases
GCGGAAATGAACACCTGAATTGCCCGGAATTTTCGAGAAATTGTCCCCAAAACGCTCAAGCCGGTTTGGTTTGTGAGCTT
TTGTGTGCGATAATGTTCAC

Downstream 100 bases:

>100_bases
ACCTATGGCTGATTTCGCCAACTACACCCCCGGGGAGTATGCGAAGGAGCACATCCGCATCACGCCGACGACGCTTGCCG
ACGGTCGTGACTTTTTCTAC

Product: transcriptional regulator, DeoR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MISSQRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIAELADKGLLKRVHGGAVTTSTLLSEPLFSVKSQMDIGLKG
AIAQEAIQYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILTNSIPVAELVQALESKDVEVIVTGGVITRSNSLVGPI
ADKVVASLRVNTVFLGTHSVSIPRGFLMPNSLEAATDMAMMDIADRTIVLTDHTKWSCTSLSLFARFDQVDTVITDDGLD
PDSAAKTKDLVKELVLAHQSETIEESE

Sequences:

>Translated_267_residues
MISSQRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIAELADKGLLKRVHGGAVTTSTLLSEPLFSVKSQMDIGLKG
AIAQEAIQYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILTNSIPVAELVQALESKDVEVIVTGGVITRSNSLVGPI
ADKVVASLRVNTVFLGTHSVSIPRGFLMPNSLEAATDMAMMDIADRTIVLTDHTKWSCTSLSLFARFDQVDTVITDDGLD
PDSAAKTKDLVKELVLAHQSETIEESE
>Mature_267_residues
MISSQRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIAELADKGLLKRVHGGAVTTSTLLSEPLFSVKSQMDIGLKG
AIAQEAIQYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGITILTNSIPVAELVQALESKDVEVIVTGGVITRSNSLVGPI
ADKVVASLRVNTVFLGTHSVSIPRGFLMPNSLEAATDMAMMDIADRTIVLTDHTKWSCTSLSLFARFDQVDTVITDDGLD
PDSAAKTKDLVKELVLAHQSETIEESE

Specific function: Probable Repressor For The Aga Operon For N-Acetyl Galactosamine Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=244, Percent_Identity=32.7868852459016, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI226510968, Length=254, Percent_Identity=32.2834645669291, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1788069, Length=238, Percent_Identity=29.4117647058824, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1789059, Length=241, Percent_Identity=26.1410788381743, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082344, Length=249, Percent_Identity=29.3172690763052, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787540, Length=234, Percent_Identity=30.3418803418803, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790635, Length=245, Percent_Identity=27.7551020408163, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789829, Length=237, Percent_Identity=27.4261603375527, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789170, Length=235, Percent_Identity=25.531914893617, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28538; Mature: 28538

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSQRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIAELADKGLLKRVHGGAVTTS
CCCCHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLLSEPLFSVKSQMDIGLKGAIAQEAIQYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCE
TILTNSIPVAELVQALESKDVEVIVTGGVITRSNSLVGPIADKVVASLRVNTVFLGTHSV
EEEECCCCHHHHHHHHHCCCEEEEEECCEEECCCCCCCHHHHHHHHHHEEEEEEEECCCC
SIPRGFLMPNSLEAATDMAMMDIADRTIVLTDHTKWSCTSLSLFARFDQVDTVITDDGLD
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCC
PDSAAKTKDLVKELVLAHQSETIEESE
CCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MISSQRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIAELADKGLLKRVHGGAVTTS
CCCCHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLLSEPLFSVKSQMDIGLKGAIAQEAIQYVAPGDVIAIGGGTTAYVFAQHLLESQQSSGI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCE
TILTNSIPVAELVQALESKDVEVIVTGGVITRSNSLVGPIADKVVASLRVNTVFLGTHSV
EEEECCCCHHHHHHHHHCCCEEEEEECCEEECCCCCCCHHHHHHHHHHEEEEEEEECCCC
SIPRGFLMPNSLEAATDMAMMDIADRTIVLTDHTKWSCTSLSLFARFDQVDTVITDDGLD
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCC
PDSAAKTKDLVKELVLAHQSETIEESE
CCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]