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The map label for this gene is yliD [C]

Identifier: 213692869

GI number: 213692869

Start: 2193869

End: 2194810

Strand: Reverse

Name: yliD [C]

Synonym: Blon_2010

Alternate gene names: 213692869

Gene position: 2194810-2193869 (Counterclockwise)

Preceding gene: 213692870

Following gene: 213692868

Centisome position: 77.48

GC content: 69.96

Gene sequence:

>942_bases
ATGGTTGATCGCAATGGTCGATGGCGTCGTTCGGGCGTGGTTCTGGGCACCATCTGGTCCCGTGGCACCGGCCGCTACTC
GCTGATCGTGCTGGGGTTGTGGATGGTCGTCGCCCTGGTGTCGTTGTTCTGGACCCCGCAGTCGTTGCTGGCCACCGACG
GCTACCACGTGTGGGACAAGCCGTCGTCCGCGCATTGGCTGGGCACCGACGGCACCGGCGCGGACGTGCTGAGCTGGCTG
ATGGCCGGCTCACGCACGAACCTTGCCATCGCCCTGCTGACCGTCATCTGCTCGGCCTGCATCGGCATGCTGCTGGTCGG
GCTTATGGTCGCCCGTTCCGCGGTGCTCGCCTCGGCGTCGGTCGCCGTGGTCGACGCGCTGATCTCCATCCCCACCGTGC
TCATCGCCCTGCTGCTCGCCGTGCCGTTCGGCGCATCCGCGGCCGTGGTGATCGGCGCGTGCTCCATCGGCTACGGGCTG
CATCTGGCGCGCGTCGCCCGTCCGGCCGCCCTGCTCGCCGCCCGCTCGGGATACGTGCAGTCGGCCCGGGCGAACGGCGC
CAGCGGGTTCGGCGTACTGGTCAGACACATCGTGCCGAACATCACGCCGGTGCTGATGGTGCAATCGTCGATGTCGGCGG
GCACCTCGGTGCTGGCCGAGGCGGGCCTGACCTATCTGGGCGTGGGCGTCGGCGCGGGGGTGCCGAGCTGGGGCCATTCG
CTGGCCACCTCGGTCAAACTCATCAACGTGTTTCCGTTGACGGTGGTGTGGCCCGGTCTGATCGTCACCCTGGTGGTGGT
CGCGCTGAACCTGTTCGGCGACGCGTTGCGCGACGCCACCGACCCGGTGTCCAACCCCGCGCTGCGGCGATCGGCCGGGG
TCGGCCGCGCCGTGCGCGCAGACGCCGCGTCGGCGGCGAAGGAGGCGGACGATGAGCGTTGA

Upstream 100 bases:

>100_bases
AGCTGTTCCTGCTCGCCGCGTTCTTCCTGCTGATCGGCCTGGCGGTGGATCTGCTGCACGCGCTGCTTGACCCGCGTCTG
GCCGCCGGAAAGGAGGAATG

Downstream 100 bases:

>100_bases
GATCCGTGGACTGCGCATCGTCATCGGCGGCACGCCGATCATCGGGGGCGTCGACCTGTCCATCGCGGACGGCGAACGGG
TGGGCCTGATAGGGGCCTCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MVDRNGRWRRSGVVLGTIWSRGTGRYSLIVLGLWMVVALVSLFWTPQSLLATDGYHVWDKPSSAHWLGTDGTGADVLSWL
MAGSRTNLAIALLTVICSACIGMLLVGLMVARSAVLASASVAVVDALISIPTVLIALLLAVPFGASAAVVIGACSIGYGL
HLARVARPAALLAARSGYVQSARANGASGFGVLVRHIVPNITPVLMVQSSMSAGTSVLAEAGLTYLGVGVGAGVPSWGHS
LATSVKLINVFPLTVVWPGLIVTLVVVALNLFGDALRDATDPVSNPALRRSAGVGRAVRADAASAAKEADDER

Sequences:

>Translated_313_residues
MVDRNGRWRRSGVVLGTIWSRGTGRYSLIVLGLWMVVALVSLFWTPQSLLATDGYHVWDKPSSAHWLGTDGTGADVLSWL
MAGSRTNLAIALLTVICSACIGMLLVGLMVARSAVLASASVAVVDALISIPTVLIALLLAVPFGASAAVVIGACSIGYGL
HLARVARPAALLAARSGYVQSARANGASGFGVLVRHIVPNITPVLMVQSSMSAGTSVLAEAGLTYLGVGVGAGVPSWGHS
LATSVKLINVFPLTVVWPGLIVTLVVVALNLFGDALRDATDPVSNPALRRSAGVGRAVRADAASAAKEADDER
>Mature_313_residues
MVDRNGRWRRSGVVLGTIWSRGTGRYSLIVLGLWMVVALVSLFWTPQSLLATDGYHVWDKPSSAHWLGTDGTGADVLSWL
MAGSRTNLAIALLTVICSACIGMLLVGLMVARSAVLASASVAVVDALISIPTVLIALLLAVPFGASAAVVIGACSIGYGL
HLARVARPAALLAARSGYVQSARANGASGFGVLVRHIVPNITPVLMVQSSMSAGTSVLAEAGLTYLGVGVGAGVPSWGHS
LATSVKLINVFPLTVVWPGLIVTLVVVALNLFGDALRDATDPVSNPALRRSAGVGRAVRADAASAAKEADDER

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=254, Percent_Identity=33.0708661417323, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=30.5785123966942, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1787760, Length=226, Percent_Identity=33.6283185840708, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789964, Length=222, Percent_Identity=36.4864864864865, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787498, Length=256, Percent_Identity=27.734375, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787549, Length=220, Percent_Identity=30.4545454545455, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788505, Length=222, Percent_Identity=25.6756756756757, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32254; Mature: 32254

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS01047 HMA_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDRNGRWRRSGVVLGTIWSRGTGRYSLIVLGLWMVVALVSLFWTPQSLLATDGYHVWDK
CCCCCCCEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEECCC
PSSAHWLGTDGTGADVLSWLMAGSRTNLAIALLTVICSACIGMLLVGLMVARSAVLASAS
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVVDALISIPTVLIALLLAVPFGASAAVVIGACSIGYGLHLARVARPAALLAARSGYVQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SARANGASGFGVLVRHIVPNITPVLMVQSSMSAGTSVLAEAGLTYLGVGVGAGVPSWGHS
HHCCCCCCHHHHHHHHHHCCCCHHHEECCHHHHHHHHHHHCCHHHEEHHHCCCCCCCHHH
LATSVKLINVFPLTVVWPGLIVTLVVVALNLFGDALRDATDPVSNPALRRSAGVGRAVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHH
DAASAAKEADDER
HHHHHHHHCCCCC
>Mature Secondary Structure
MVDRNGRWRRSGVVLGTIWSRGTGRYSLIVLGLWMVVALVSLFWTPQSLLATDGYHVWDK
CCCCCCCEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEECCC
PSSAHWLGTDGTGADVLSWLMAGSRTNLAIALLTVICSACIGMLLVGLMVARSAVLASAS
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVVDALISIPTVLIALLLAVPFGASAAVVIGACSIGYGLHLARVARPAALLAARSGYVQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SARANGASGFGVLVRHIVPNITPVLMVQSSMSAGTSVLAEAGLTYLGVGVGAGVPSWGHS
HHCCCCCCHHHHHHHHHHCCCCHHHEECCHHHHHHHHHHHCCHHHEEHHHCCCCCCCHHH
LATSVKLINVFPLTVVWPGLIVTLVVVALNLFGDALRDATDPVSNPALRRSAGVGRAVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHH
DAASAAKEADDER
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]