| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is yejF [C]
Identifier: 213692868
GI number: 213692868
Start: 2193037
End: 2193879
Strand: Reverse
Name: yejF [C]
Synonym: Blon_2009
Alternate gene names: 213692868
Gene position: 2193879-2193037 (Counterclockwise)
Preceding gene: 213692869
Following gene: 213692867
Centisome position: 77.45
GC content: 66.79
Gene sequence:
>843_bases ATGAGCGTTGAGATCCGTGGACTGCGCATCGTCATCGGCGGCACGCCGATCATCGGGGGCGTCGACCTGTCCATCGCGGA CGGCGAACGGGTGGGCCTGATAGGGGCCTCCGGCTCCGGCAAGTCGATGATCGCCAAATCGCTGCTCGGCCTGTTGCCGC ATGAGGCCGTGCCGTCCGGCGAGATCACGATGGGGGACACCTCCGTGCTGTCCGGCGAAGACGGCGGCGCGGACGGGCTG GCGGGGAACGCGCGTTGCACATACGCCGACGAGCATGTCCTCGCCGACCTGCGAGGCCGGTATGTGGGCACGGTATTCCA GAATCCGGCCCATGCGCTCAATCCGGTGATGACCGCGGCGCAGCAGATCGCCCTGCCGTTGCGCATGCACTACGATCTGA GCAAAGCCGAACGCGCCGACCGGGTGGCCTTCATGTTGGACAAGGTCGGACTGGGCCGTGACGTGGCCGGCAAATACCCG CATGAACTCTCCGGCGGCCAACAGCAGCGCGTAGGCATCGCCACGGCGCTGATCACCTCGCCGCGGTTCATCATCGCCGA CGAACCCACCACGGCGCTCGACTCCATCACGCAACGCCAGATCGTGGACCTGCTGACCTCGCTGGTGGACGACGCCGGCG CATCCATGCTGTTCATCACCCACGATTTCTCCGTGCTCGCGCGGGCCACCGAACGATGCTACGTGTTGGACGCCGGCCGC ATCATCGAATCAGGGGCCACCGCCGATCTGCTCGCCGCGCCCGACACGCCGCAGGCCCAGCGCCTAGTCGCCGCCGCCCA AACCCTCACCCTCCACACTCCCAAGGAGGATTCGCATGAGTAA
Upstream 100 bases:
>100_bases GACGCCACCGACCCGGTGTCCAACCCCGCGCTGCGGCGATCGGCCGGGGTCGGCCGCGCCGTGCGCGCAGACGCCGCGTC GGCGGCGAAGGAGGCGGACG
Downstream 100 bases:
>100_bases CAGCAGTGTGCCGCTCCTCTCCGCCCACTCCATCACCAAATCCTTCGGCCCGCGCGCCGCACGCCACCAAGTCCTCTTCG ACATCTCCGTCGACGTCCAC
Product: ABC transporter
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MSVEIRGLRIVIGGTPIIGGVDLSIADGERVGLIGASGSGKSMIAKSLLGLLPHEAVPSGEITMGDTSVLSGEDGGADGL AGNARCTYADEHVLADLRGRYVGTVFQNPAHALNPVMTAAQQIALPLRMHYDLSKAERADRVAFMLDKVGLGRDVAGKYP HELSGGQQQRVGIATALITSPRFIIADEPTTALDSITQRQIVDLLTSLVDDAGASMLFITHDFSVLARATERCYVLDAGR IIESGATADLLAAPDTPQAQRLVAAAQTLTLHTPKEDSHE
Sequences:
>Translated_280_residues MSVEIRGLRIVIGGTPIIGGVDLSIADGERVGLIGASGSGKSMIAKSLLGLLPHEAVPSGEITMGDTSVLSGEDGGADGL AGNARCTYADEHVLADLRGRYVGTVFQNPAHALNPVMTAAQQIALPLRMHYDLSKAERADRVAFMLDKVGLGRDVAGKYP HELSGGQQQRVGIATALITSPRFIIADEPTTALDSITQRQIVDLLTSLVDDAGASMLFITHDFSVLARATERCYVLDAGR IIESGATADLLAAPDTPQAQRLVAAAQTLTLHTPKEDSHE >Mature_279_residues SVEIRGLRIVIGGTPIIGGVDLSIADGERVGLIGASGSGKSMIAKSLLGLLPHEAVPSGEITMGDTSVLSGEDGGADGLA GNARCTYADEHVLADLRGRYVGTVFQNPAHALNPVMTAAQQIALPLRMHYDLSKAERADRVAFMLDKVGLGRDVAGKYPH ELSGGQQQRVGIATALITSPRFIIADEPTTALDSITQRQIVDLLTSLVDDAGASMLFITHDFSVLARATERCYVLDAGRI IESGATADLLAAPDTPQAQRLVAAAQTLTLHTPKEDSHE
Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]
COG id: COG4172
COG function: function code R; ABC-type uncharacterized transport system, duplicated ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=242, Percent_Identity=30.9917355371901, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI156105685, Length=238, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1788506, Length=254, Percent_Identity=37.7952755905512, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI48994883, Length=273, Percent_Identity=34.7985347985348, Blast_Score=155, Evalue=2e-39, Organism=Escherichia coli, GI1787500, Length=250, Percent_Identity=36.8, Blast_Score=154, Evalue=7e-39, Organism=Escherichia coli, GI1787759, Length=244, Percent_Identity=39.7540983606557, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI145693107, Length=248, Percent_Identity=35.8870967741936, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1789963, Length=248, Percent_Identity=35.0806451612903, Blast_Score=140, Evalue=7e-35, Organism=Escherichia coli, GI1787547, Length=247, Percent_Identity=30.3643724696356, Blast_Score=134, Evalue=5e-33, Organism=Escherichia coli, GI1789962, Length=253, Percent_Identity=31.6205533596838, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1787370, Length=254, Percent_Identity=33.8582677165354, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1788225, Length=265, Percent_Identity=34.3396226415094, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1787548, Length=275, Percent_Identity=30.5454545454545, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1787758, Length=246, Percent_Identity=32.520325203252, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787029, Length=263, Percent_Identity=34.6007604562738, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1789890, Length=269, Percent_Identity=34.5724907063197, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1789891, Length=235, Percent_Identity=33.1914893617021, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1786398, Length=263, Percent_Identity=35.361216730038, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1786703, Length=246, Percent_Identity=34.5528455284553, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1790162, Length=270, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1786872, Length=230, Percent_Identity=33.4782608695652, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1789672, Length=252, Percent_Identity=29.3650793650794, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1788761, Length=262, Percent_Identity=30.9160305343511, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787089, Length=259, Percent_Identity=32.046332046332, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787105, Length=228, Percent_Identity=35.9649122807018, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=35.2422907488987, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788450, Length=252, Percent_Identity=28.968253968254, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=30.859375, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI87081791, Length=267, Percent_Identity=28.8389513108614, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI87081709, Length=263, Percent_Identity=29.6577946768061, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788644, Length=183, Percent_Identity=35.5191256830601, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=30.4721030042918, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI48994997, Length=250, Percent_Identity=30.4, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=33.4782608695652, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1789032, Length=232, Percent_Identity=30.6034482758621, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790467, Length=265, Percent_Identity=27.9245283018868, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87082267, Length=245, Percent_Identity=28.9795918367347, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787164, Length=225, Percent_Identity=27.1111111111111, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787143, Length=255, Percent_Identity=34.1176470588235, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=30.1255230125523, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789864, Length=257, Percent_Identity=24.5136186770428, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1786253, Length=231, Percent_Identity=27.7056277056277, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787112, Length=236, Percent_Identity=27.9661016949153, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789593, Length=240, Percent_Identity=27.5, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789586, Length=279, Percent_Identity=27.9569892473118, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786345, Length=250, Percent_Identity=27.6, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI48994943, Length=278, Percent_Identity=26.978417266187, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786319, Length=243, Percent_Identity=26.7489711934156, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1790534, Length=224, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786803, Length=255, Percent_Identity=25.0980392156863, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25146777, Length=236, Percent_Identity=30.5084745762712, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71996550, Length=247, Percent_Identity=31.1740890688259, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI193209708, Length=246, Percent_Identity=29.6747967479675, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71996809, Length=255, Percent_Identity=27.4509803921569, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193211015, Length=255, Percent_Identity=27.4509803921569, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193211017, Length=255, Percent_Identity=27.4509803921569, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193208177, Length=264, Percent_Identity=26.5151515151515, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI212646699, Length=238, Percent_Identity=25.2100840336134, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI115533592, Length=241, Percent_Identity=29.8755186721992, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193202349, Length=240, Percent_Identity=27.5, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71984940, Length=239, Percent_Identity=30.5439330543933, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17565938, Length=238, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567265, Length=237, Percent_Identity=27.8481012658228, Blast_Score=69, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=240, Percent_Identity=30, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324498, Length=234, Percent_Identity=24.7863247863248, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574744, Length=262, Percent_Identity=28.2442748091603, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24659289, Length=259, Percent_Identity=29.3436293436293, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI281363262, Length=248, Percent_Identity=29.8387096774194, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24653245, Length=248, Percent_Identity=29.8387096774194, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24641565, Length=244, Percent_Identity=29.9180327868852, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17647219, Length=104, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI45552805, Length=83, Percent_Identity=43.3734939759036, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI23397593, Length=241, Percent_Identity=29.045643153527, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574533, Length=170, Percent_Identity=30, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136662, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=248, Percent_Identity=27.4193548387097, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24650853, Length=236, Percent_Identity=23.728813559322, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24650855, Length=236, Percent_Identity=23.728813559322, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 29401; Mature: 29270
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVEIRGLRIVIGGTPIIGGVDLSIADGERVGLIGASGSGKSMIAKSLLGLLPHEAVPSG CCEEEEEEEEEEECCCEECCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC EITMGDTSVLSGEDGGADGLAGNARCTYADEHVLADLRGRYVGTVFQNPAHALNPVMTAA CEEECCCEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCEEEEHHCCCHHHHHHHHHHH QQIALPLRMHYDLSKAERADRVAFMLDKVGLGRDVAGKYPHELSGGQQQRVGIATALITS HHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHEEHEECC PRFIIADEPTTALDSITQRQIVDLLTSLVDDAGASMLFITHDFSVLARATERCYVLDAGR CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCEEEEECCC IIESGATADLLAAPDTPQAQRLVAAAQTLTLHTPKEDSHE EECCCCCEEEEECCCCCHHHHHHHHHHEEEEECCCCCCCC >Mature Secondary Structure SVEIRGLRIVIGGTPIIGGVDLSIADGERVGLIGASGSGKSMIAKSLLGLLPHEAVPSG CEEEEEEEEEEECCCEECCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC EITMGDTSVLSGEDGGADGLAGNARCTYADEHVLADLRGRYVGTVFQNPAHALNPVMTAA CEEECCCEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCEEEEHHCCCHHHHHHHHHHH QQIALPLRMHYDLSKAERADRVAFMLDKVGLGRDVAGKYPHELSGGQQQRVGIATALITS HHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHEEHEECC PRFIIADEPTTALDSITQRQIVDLLTSLVDDAGASMLFITHDFSVLARATERCYVLDAGR CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCEEEEECCC IIESGATADLLAAPDTPQAQRLVAAAQTLTLHTPKEDSHE EECCCCCEEEEECCCCCHHHHHHHHHHEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA