| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692846
Identifier: 213692846
GI number: 213692846
Start: 2165886
End: 2167094
Strand: Direct
Name: 213692846
Synonym: Blon_1987
Alternate gene names: NA
Gene position: 2165886-2167094 (Clockwise)
Preceding gene: 213692842
Following gene: 213692848
Centisome position: 76.46
GC content: 59.64
Gene sequence:
>1209_bases ATGGGGACAACGGAGAGCAACATAGATCACACCGCATCGGGCCAGACCGTCGCAGGCGATAGTGGTGAGCTCACTTTCAC ATACGCACAGGGTCGTTTTGCCAGTGAAGGCAGGGATTGGGAAAGCCCGGTTGTGACCAACATGACTGCATCCGTCTCTG CCGATGCCGGTAATGCCCTCGCCGGCAGCATCATCAACACCGGCTCCAACAACACTTTCACCAGCACCACCGAATCGTCG CTTGCCACCCTGCTGTCCGACCAATGCCCGTTCGTTATCAAGGCCACCATTTTCGAGGGCAATGGCAAAAACGCCATTCG CGAACGTCACACATTCACCGGCTCGGTGCTGCGCCAGCTCGACCAAGCCAGCGCCCTGCTGAACGGCATCAACGAATCCG GCCAACACCCGGCCATAGCCCTGCGCGAAGCATTGGTCAACGCACTGGAACATCGCGATTACACGTACTCCGGCCCCACA CTGATCAATATCTTCGATTCCCGCTTGGAGATCGTGTCGCTCGGCGGCCTGACCGATGGTTTGGAAATCAATGATCTACT CAACGGCGTATGCCAGCCACGCACCCCGCGTTTGGCTGAATTGTTCGCCGATCTGGGCCTCTGCGAGAACTGCGGTACCG GCATTCAACGCATTATGGACGCCTACGCGCAGAGCGCGGTCAGTCCGCAACTGCGCGTGGGCCCCACTTCGGTGGCAATG GTGCTGCCCATCCCGGTATCGGCCGAGGCCGCATCCTCGCATCGAACCGATACCGATGCATCCGCCGCGCCCAGCACCAC TGACGAGGCGCAGCGCGCCAAAATGTACTCATTCCCCACGATTCAGCGCATGACGGATAACGCCGCAGATGCTTTGGCCG GCGCACGCATCATCGGCTGCGCGCCATTGCAGACACTGATTCTCGGCAGCGGATTCGGCGAGCGCCCGGACGGTGACGAT CAGGTCAGTACCCGCCCGCTCGATACGGCAACGCTGGAACCGTCGCCTCAAACGTTGGAGCAGTTCACGCTCAATTTCCT CGCGTTCCGCGGCGTGAAGCTCAGCCGTAAAACCATGCAGAAAGCGCTTGGTCTGAACAAGGATCAGATGACGCAGCTCT TGGACCAGCTGGAGTTGAGCGGCAAGATCGAACGTCATACACACGCCAAGTCCACTACGTATTCGCTGGCACATGCCTCA GGACGGTAG
Upstream 100 bases:
>100_bases TCTATCCAGCTGAGCTACGGGGCCAAACTCATGTAAGTCTAGCCGTAGGGGTGTAAAACACCTCGGCGTAACGTCGGCTT GCACCGGTACCATCGGCGAT
Downstream 100 bases:
>100_bases CGACCAGGGCGACAACGACCAAATCGTCAACAACCCAAGCAGCAACGACCAGAGCAATACAGCCCAAGGCGCGATAAAGC AGCAGCTCAGTTCTCGAATA
Product: transcriptional regulator
Products: NA
Alternate protein names: ATP-Dependent DNA Helicase; Divergent AAA Domain Protein; ATP-Dependent DNA Helicase RecG; Crp Family Transcriptional Regulator
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MGTTESNIDHTASGQTVAGDSGELTFTYAQGRFASEGRDWESPVVTNMTASVSADAGNALAGSIINTGSNNTFTSTTESS LATLLSDQCPFVIKATIFEGNGKNAIRERHTFTGSVLRQLDQASALLNGINESGQHPAIALREALVNALEHRDYTYSGPT LINIFDSRLEIVSLGGLTDGLEINDLLNGVCQPRTPRLAELFADLGLCENCGTGIQRIMDAYAQSAVSPQLRVGPTSVAM VLPIPVSAEAASSHRTDTDASAAPSTTDEAQRAKMYSFPTIQRMTDNAADALAGARIIGCAPLQTLILGSGFGERPDGDD QVSTRPLDTATLEPSPQTLEQFTLNFLAFRGVKLSRKTMQKALGLNKDQMTQLLDQLELSGKIERHTHAKSTTYSLAHAS GR
Sequences:
>Translated_402_residues MGTTESNIDHTASGQTVAGDSGELTFTYAQGRFASEGRDWESPVVTNMTASVSADAGNALAGSIINTGSNNTFTSTTESS LATLLSDQCPFVIKATIFEGNGKNAIRERHTFTGSVLRQLDQASALLNGINESGQHPAIALREALVNALEHRDYTYSGPT LINIFDSRLEIVSLGGLTDGLEINDLLNGVCQPRTPRLAELFADLGLCENCGTGIQRIMDAYAQSAVSPQLRVGPTSVAM VLPIPVSAEAASSHRTDTDASAAPSTTDEAQRAKMYSFPTIQRMTDNAADALAGARIIGCAPLQTLILGSGFGERPDGDD QVSTRPLDTATLEPSPQTLEQFTLNFLAFRGVKLSRKTMQKALGLNKDQMTQLLDQLELSGKIERHTHAKSTTYSLAHAS GR >Mature_401_residues GTTESNIDHTASGQTVAGDSGELTFTYAQGRFASEGRDWESPVVTNMTASVSADAGNALAGSIINTGSNNTFTSTTESSL ATLLSDQCPFVIKATIFEGNGKNAIRERHTFTGSVLRQLDQASALLNGINESGQHPAIALREALVNALEHRDYTYSGPTL INIFDSRLEIVSLGGLTDGLEINDLLNGVCQPRTPRLAELFADLGLCENCGTGIQRIMDAYAQSAVSPQLRVGPTSVAMV LPIPVSAEAASSHRTDTDASAAPSTTDEAQRAKMYSFPTIQRMTDNAADALAGARIIGCAPLQTLILGSGFGERPDGDDQ VSTRPLDTATLEPSPQTLEQFTLNFLAFRGVKLSRKTMQKALGLNKDQMTQLLDQLELSGKIERHTHAKSTTYSLAHASG R
Specific function: Unknown
COG id: COG2865
COG function: function code K; Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42766; Mature: 42635
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTTESNIDHTASGQTVAGDSGELTFTYAQGRFASEGRDWESPVVTNMTASVSADAGNAL CCCCCCCCCCCCCCCEEECCCCCEEEEEECCEECCCCCCCCCCEEECCEEECCCCCCCHH AGSIINTGSNNTFTSTTESSLATLLSDQCPFVIKATIFEGNGKNAIRERHTFTGSVLRQL CCHHEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHH DQASALLNGINESGQHPAIALREALVNALEHRDYTYSGPTLINIFDSRLEIVSLGGLTDG HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCC LEINDLLNGVCQPRTPRLAELFADLGLCENCGTGIQRIMDAYAQSAVSPQLRVGPTSVAM CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEECCCCEEE VLPIPVSAEAASSHRTDTDASAAPSTTDEAQRAKMYSFPTIQRMTDNAADALAGARIIGC EEECCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEC APLQTLILGSGFGERPDGDDQVSTRPLDTATLEPSPQTLEQFTLNFLAFRGVKLSRKTMQ HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH KALGLNKDQMTQLLDQLELSGKIERHTHAKSTTYSLAHASGR HHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCCC >Mature Secondary Structure GTTESNIDHTASGQTVAGDSGELTFTYAQGRFASEGRDWESPVVTNMTASVSADAGNAL CCCCCCCCCCCCCCEEECCCCCEEEEEECCEECCCCCCCCCCEEECCEEECCCCCCCHH AGSIINTGSNNTFTSTTESSLATLLSDQCPFVIKATIFEGNGKNAIRERHTFTGSVLRQL CCHHEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHH DQASALLNGINESGQHPAIALREALVNALEHRDYTYSGPTLINIFDSRLEIVSLGGLTDG HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCC LEINDLLNGVCQPRTPRLAELFADLGLCENCGTGIQRIMDAYAQSAVSPQLRVGPTSVAM CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEECCCCEEE VLPIPVSAEAASSHRTDTDASAAPSTTDEAQRAKMYSFPTIQRMTDNAADALAGARIIGC EEECCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEC APLQTLILGSGFGERPDGDDQVSTRPLDTATLEPSPQTLEQFTLNFLAFRGVKLSRKTMQ HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH KALGLNKDQMTQLLDQLELSGKIERHTHAKSTTYSLAHASGR HHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA