| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is dxs [H]
Identifier: 213692842
GI number: 213692842
Start: 2159890
End: 2162037
Strand: Direct
Name: dxs [H]
Synonym: Blon_1983
Alternate gene names: 213692842
Gene position: 2159890-2162037 (Clockwise)
Preceding gene: 213692837
Following gene: 213692846
Centisome position: 76.25
GC content: 65.08
Gene sequence:
>2148_bases ATGCGCAACGCGTCAGGAAACGGATTTGATTCAAGCGATTCCCTCGCCGTCTCCGGCGCCGCCGAGGGGACCGCGCGCCT TCACGACATCCCCCCGAGCATTACCCCTTCCCATGGCGACGACTCCCATCTGCTGAGCCGCATTGCCAGCCCGGCCGATG TCAAGGCCCTTGCTCCCAACGAGCTCGCCGAACTCTGCCGTGAGATTCGCGCCACGCTGCTGGCATATGGCCACCAACAC GGCGGTCATATCGGCTCCAATCTGGGCATGGTGGAGGCCACGGTGGCCCTGCATCGCGTATTCGATTCGCCGCGTGACCG CATCGTGTTCGACGTGTCCCACCAAAGCTACGTGCATAAGATGCTCACGGGCCGCGCCGACGCCTATCTGGACCCAGACC GTTTCAGCGAGGTGACTGGCTTCACCAATCCGGATGAAAGCAAACACGACCAGTTCGTGCTCGGCCACACCGGTACCTCG ATTTCACTGGCTTGCGGTTTGGCGAAAACCCGCGATATGGAAGGCCCGAACAGCGGCATCGGCAATGTGGTCGCCGTGAT CGGGGACGGTTCGCTGAGTTCGGGCGTGGCGTTTGAAGGACTGAACAACGCGGCTGAGCAGGGCGGCAATCTCATCATTG TGTTCAACGACAATGAGATGTCGATTGCCGGCGATTTCGGTGGCATGTACGGTCCGCTCGCCCGCCTGCGCGCGTCCGGC GGCACCGCCCAGCCGAATCTGTTCAACGCGTTCGGTCTGGATTATCGGTATGTGGAATCCGGCAACGATGTTTCCGCGCT GGTCGCGGCTTTCGAGGAAGTGCGCAATATCGATCATCCGGTGGTGGTCCATATCCACACGCTGAAGGGCGCGGGATACG ACGGCGCCGGTCACGTGGCCGGCACATCCTCGGCCTCGGTCGGGAACGTCCATGAGCCGGATTCGGCAGTCTCCGACACC GGCGTGCGCCCCACGAGCAACGTGCTGCACAGCGAACCGTGGCATTCGGATCACTGCAATCTGTCCGATCACGAACCGCA TGAGGGCCAGTGCGAGGCCTCACACTGGCAGAACCCGGATTCGGCCATCGGCAAGGCGGACAATCCGCGCAAGCATTACG GCAAGATGGCGATGGCGGCCCTCGAGCCCCGATTCGCCGACGAACCGGGGCTGGTGGTCATCTCCCCCGCCACGCCGGGC TCCAACGGCATCACCCATGAATTCCGCGAACGCGCGGGCTCGCATTACGTGGACACGGGCATCACCGAATCGCATGCCGT GGCGTATGCCGCCGGCATCGCGCGGGCGGGCGGCACCCCCGTGGTGGCCACCACGGCGTCCTTCTTCCAACGCGCCTACG ACCAGTTCTTCCAGGAGATGAGCCTGAACCGTTCGCGGGTCACGGTGCTTGATTTCCTGGGCGGCGTGTCTGCCTCGGAC AATACGCATTCGGGCGCATATGACGTGGCGATGTTCGCCAACATCCCCGGGGTCACGATGCTGGCGCCGACCTCGGCCGA CGAGTATCTGGCCGACCTCGCGTGGGCCACCGCGCCTTCCGGCGCCACGCACGCCCCCGACGGGCCGGTGGTGATCCGCG TGCCCGGAGAGCCGCTGCTGTCGGCCGAGCGAGACCCGAGTCTGCTGCCGCTGACCGGCGGTCGGTTCGCGGCGCACCCC CGGCCTGCCACAAGGTCCCACGGCGACGACGGATACCGCATGCTGGACTGGCGCGTCAACCAGGCCGGGTCGGCGGTCGC GCTCATAGGCCTGGGCAACGCCTATCCGCTGGCCGAGCAAACGGCCGCCGCGCTGTGCGCGGACCACGGCATCACGGCGA CGGTCATCGACCCGCGCCAATGCTCATCACTGGACTGCGCCACCCTGGAATCGTTGCGTGACGGCCACACACTGGTCGTC ACTCTCGAGGACGGTCAGCGCGAAGGCGGCTGGGGCGAGAAGGTGACCGCATACTACGCGAATCATCACGTGCCCGAATG CGATGCGGCCGGCCACGATCGCAATCCGCGCGTGCTGAACTTCGGCGCGGACAAGGAATTCACCGACCGCGTGCCGCTGG ACGTCTTGGACGAGCGGTATGGCCTGACGGTACATCAGGTGGTCGAATCGGTCACTCGTTGTTTTTGA
Upstream 100 bases:
>100_bases TACGGAGATGTTGGGGGCATTGCTTCGTCATGTGGACCTCGGACAATGCCGGGCGTTAGCATTCAACTTCGGAAAGATTA GCGAAGGGAGATTCGAGGGT
Downstream 100 bases:
>100_bases TGGCGTCTAGGGCCGGGATTTTAACGGCTTTATTGGCCGGGCCGAAGCCGAACAGCAAGCCGATCAGCGTGGAAAACAGT ACGGCGAACAGGAACAGCCA
Product: 1-deoxy-D-xylulose-5-phosphate synthase
Products: NA
Alternate protein names: 1-deoxyxylulose-5-phosphate synthase; DXP synthase; DXPS [H]
Number of amino acids: Translated: 715; Mature: 715
Protein sequence:
>715_residues MRNASGNGFDSSDSLAVSGAAEGTARLHDIPPSITPSHGDDSHLLSRIASPADVKALAPNELAELCREIRATLLAYGHQH GGHIGSNLGMVEATVALHRVFDSPRDRIVFDVSHQSYVHKMLTGRADAYLDPDRFSEVTGFTNPDESKHDQFVLGHTGTS ISLACGLAKTRDMEGPNSGIGNVVAVIGDGSLSSGVAFEGLNNAAEQGGNLIIVFNDNEMSIAGDFGGMYGPLARLRASG GTAQPNLFNAFGLDYRYVESGNDVSALVAAFEEVRNIDHPVVVHIHTLKGAGYDGAGHVAGTSSASVGNVHEPDSAVSDT GVRPTSNVLHSEPWHSDHCNLSDHEPHEGQCEASHWQNPDSAIGKADNPRKHYGKMAMAALEPRFADEPGLVVISPATPG SNGITHEFRERAGSHYVDTGITESHAVAYAAGIARAGGTPVVATTASFFQRAYDQFFQEMSLNRSRVTVLDFLGGVSASD NTHSGAYDVAMFANIPGVTMLAPTSADEYLADLAWATAPSGATHAPDGPVVIRVPGEPLLSAERDPSLLPLTGGRFAAHP RPATRSHGDDGYRMLDWRVNQAGSAVALIGLGNAYPLAEQTAAALCADHGITATVIDPRQCSSLDCATLESLRDGHTLVV TLEDGQREGGWGEKVTAYYANHHVPECDAAGHDRNPRVLNFGADKEFTDRVPLDVLDERYGLTVHQVVESVTRCF
Sequences:
>Translated_715_residues MRNASGNGFDSSDSLAVSGAAEGTARLHDIPPSITPSHGDDSHLLSRIASPADVKALAPNELAELCREIRATLLAYGHQH GGHIGSNLGMVEATVALHRVFDSPRDRIVFDVSHQSYVHKMLTGRADAYLDPDRFSEVTGFTNPDESKHDQFVLGHTGTS ISLACGLAKTRDMEGPNSGIGNVVAVIGDGSLSSGVAFEGLNNAAEQGGNLIIVFNDNEMSIAGDFGGMYGPLARLRASG GTAQPNLFNAFGLDYRYVESGNDVSALVAAFEEVRNIDHPVVVHIHTLKGAGYDGAGHVAGTSSASVGNVHEPDSAVSDT GVRPTSNVLHSEPWHSDHCNLSDHEPHEGQCEASHWQNPDSAIGKADNPRKHYGKMAMAALEPRFADEPGLVVISPATPG SNGITHEFRERAGSHYVDTGITESHAVAYAAGIARAGGTPVVATTASFFQRAYDQFFQEMSLNRSRVTVLDFLGGVSASD NTHSGAYDVAMFANIPGVTMLAPTSADEYLADLAWATAPSGATHAPDGPVVIRVPGEPLLSAERDPSLLPLTGGRFAAHP RPATRSHGDDGYRMLDWRVNQAGSAVALIGLGNAYPLAEQTAAALCADHGITATVIDPRQCSSLDCATLESLRDGHTLVV TLEDGQREGGWGEKVTAYYANHHVPECDAAGHDRNPRVLNFGADKEFTDRVPLDVLDERYGLTVHQVVESVTRCF >Mature_715_residues MRNASGNGFDSSDSLAVSGAAEGTARLHDIPPSITPSHGDDSHLLSRIASPADVKALAPNELAELCREIRATLLAYGHQH GGHIGSNLGMVEATVALHRVFDSPRDRIVFDVSHQSYVHKMLTGRADAYLDPDRFSEVTGFTNPDESKHDQFVLGHTGTS ISLACGLAKTRDMEGPNSGIGNVVAVIGDGSLSSGVAFEGLNNAAEQGGNLIIVFNDNEMSIAGDFGGMYGPLARLRASG GTAQPNLFNAFGLDYRYVESGNDVSALVAAFEEVRNIDHPVVVHIHTLKGAGYDGAGHVAGTSSASVGNVHEPDSAVSDT GVRPTSNVLHSEPWHSDHCNLSDHEPHEGQCEASHWQNPDSAIGKADNPRKHYGKMAMAALEPRFADEPGLVVISPATPG SNGITHEFRERAGSHYVDTGITESHAVAYAAGIARAGGTPVVATTASFFQRAYDQFFQEMSLNRSRVTVLDFLGGVSASD NTHSGAYDVAMFANIPGVTMLAPTSADEYLADLAWATAPSGATHAPDGPVVIRVPGEPLLSAERDPSLLPLTGGRFAAHP RPATRSHGDDGYRMLDWRVNQAGSAVALIGLGNAYPLAEQTAAALCADHGITATVIDPRQCSSLDCATLESLRDGHTLVV TLEDGQREGGWGEKVTAYYANHHVPECDAAGHDRNPRVLNFGADKEFTDRVPLDVLDERYGLTVHQVVESVTRCF
Specific function: Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) [H]
COG id: COG1154
COG function: function code HI; Deoxyxylulose-5-phosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family. DXPS subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786622, Length=655, Percent_Identity=28.8549618320611, Blast_Score=232, Evalue=7e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005477 - InterPro: IPR011766 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02775 TPP_enzyme_C; PF02779 Transket_pyr; PF02780 Transketolase_C [H]
EC number: =2.2.1.7 [H]
Molecular weight: Translated: 75718; Mature: 75718
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNASGNGFDSSDSLAVSGAAEGTARLHDIPPSITPSHGDDSHLLSRIASPADVKALAPN CCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCEECCHH ELAELCREIRATLLAYGHQHGGHIGSNLGMVEATVALHRVFDSPRDRIVFDVSHQSYVHK HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHH MLTGRADAYLDPDRFSEVTGFTNPDESKHDQFVLGHTGTSISLACGLAKTRDMEGPNSGI HHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEECCHHHCCCCCCCCCC GNVVAVIGDGSLSSGVAFEGLNNAAEQGGNLIIVFNDNEMSIAGDFGGMYGPLARLRASG CCEEEEEECCCCCCCEEECCCCHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCC GTAQPNLFNAFGLDYRYVESGNDVSALVAAFEEVRNIDHPVVVHIHTLKGAGYDGAGHVA CCCCCCCCHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC GTSSASVGNVHEPDSAVSDTGVRPTSNVLHSEPWHSDHCNLSDHEPHEGQCEASHWQNPD CCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCH SAIGKADNPRKHYGKMAMAALEPRFADEPGLVVISPATPGSNGITHEFRERAGSHYVDTG HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCEEECCC ITESHAVAYAAGIARAGGTPVVATTASFFQRAYDQFFQEMSLNRSRVTVLDFLGGVSASD CCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC NTHSGAYDVAMFANIPGVTMLAPTSADEYLADLAWATAPSGATHAPDGPVVIRVPGEPLL CCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC SAERDPSLLPLTGGRFAAHPRPATRSHGDDGYRMLDWRVNQAGSAVALIGLGNAYPLAEQ CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHH TAAALCADHGITATVIDPRQCSSLDCATLESLRDGHTLVVTLEDGQREGGWGEKVTAYYA HHHHHHHCCCCEEEEECCHHCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEC NHHVPECDAAGHDRNPRVLNFGADKEFTDRVPLDVLDERYGLTVHQVVESVTRCF CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure MRNASGNGFDSSDSLAVSGAAEGTARLHDIPPSITPSHGDDSHLLSRIASPADVKALAPN CCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCEECCHH ELAELCREIRATLLAYGHQHGGHIGSNLGMVEATVALHRVFDSPRDRIVFDVSHQSYVHK HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHH MLTGRADAYLDPDRFSEVTGFTNPDESKHDQFVLGHTGTSISLACGLAKTRDMEGPNSGI HHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEECCHHHCCCCCCCCCC GNVVAVIGDGSLSSGVAFEGLNNAAEQGGNLIIVFNDNEMSIAGDFGGMYGPLARLRASG CCEEEEEECCCCCCCEEECCCCHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCC GTAQPNLFNAFGLDYRYVESGNDVSALVAAFEEVRNIDHPVVVHIHTLKGAGYDGAGHVA CCCCCCCCHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC GTSSASVGNVHEPDSAVSDTGVRPTSNVLHSEPWHSDHCNLSDHEPHEGQCEASHWQNPD CCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCH SAIGKADNPRKHYGKMAMAALEPRFADEPGLVVISPATPGSNGITHEFRERAGSHYVDTG HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCEEECCC ITESHAVAYAAGIARAGGTPVVATTASFFQRAYDQFFQEMSLNRSRVTVLDFLGGVSASD CCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC NTHSGAYDVAMFANIPGVTMLAPTSADEYLADLAWATAPSGATHAPDGPVVIRVPGEPLL CCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC SAERDPSLLPLTGGRFAAHPRPATRSHGDDGYRMLDWRVNQAGSAVALIGLGNAYPLAEQ CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHH TAAALCADHGITATVIDPRQCSSLDCATLESLRDGHTLVVTLEDGQREGGWGEKVTAYYA HHHHHHHCCCCEEEEECCHHCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEC NHHVPECDAAGHDRNPRVLNFGADKEFTDRVPLDVLDERYGLTVHQVVESVTRCF CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA