| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is zur [H]
Identifier: 213692834
GI number: 213692834
Start: 2153866
End: 2154366
Strand: Direct
Name: zur [H]
Synonym: Blon_1974
Alternate gene names: 213692834
Gene position: 2153866-2154366 (Clockwise)
Preceding gene: 213692833
Following gene: 213692835
Centisome position: 76.03
GC content: 61.68
Gene sequence:
>501_bases ATGAGCACCGAGCAAACCGCGACCACTCGGCGCGTGACGCGACCCCGACTCCTCATCACCCAGGTCCTGGCGGAACTATC CCGATTCGCCACGGCCCAGGAAATCACCGACATCCTGCGCGAGCGCGGCACGCGCATCGGCACGGCCACCGCCTACCGCA ATGTGCAGATGATGGCCTCCCAAGGCGAGCTCGACGTAATCCACGTCAACGGCGAGGCCCTCTACCGCGAGTGCTCGGAC CAGCATCACCACCATCACATCGTATGCCACGAATGCGGGCGGACCATCGAAATCGAGATTCCCGGACTTGAGCAGTGGAT CGACAAAGCCGCCAAGCAGTTGAAGTACCAGACCATCGCCCACGAACTGGAGATTTTCGACCTGTGCCCCAAGTGTGCGG CGAAGCATGCCATCGAACCGCCTCTCAGCGTCGGCACCTCACCAAAGGATGGACCACTGACGACGCCAGACGATACTGGC CGTCGGCGCTCGAACAAATAA
Upstream 100 bases:
>100_bases TCTGCCAGTTGATTCAAATCATGTGACAACATGCCGGGCATCTGATTTGCTTTAATAACGATAATGAATATCATTTGTTA ACAGAAAGGGGCAGAACGTC
Downstream 100 bases:
>100_bases TGGCGCAGTCCCGACGCTACTGGCCTTCAGCATCGGTGCCCTTCCAATCCTTGGCGCAATAGCGACGATATAAGCTCCAC TCGCATCGTTAGATTGCCAA
Product: ferric uptake regulator, Fur family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MSTEQTATTRRVTRPRLLITQVLAELSRFATAQEITDILRERGTRIGTATAYRNVQMMASQGELDVIHVNGEALYRECSD QHHHHHIVCHECGRTIEIEIPGLEQWIDKAAKQLKYQTIAHELEIFDLCPKCAAKHAIEPPLSVGTSPKDGPLTTPDDTG RRRSNK
Sequences:
>Translated_166_residues MSTEQTATTRRVTRPRLLITQVLAELSRFATAQEITDILRERGTRIGTATAYRNVQMMASQGELDVIHVNGEALYRECSD QHHHHHIVCHECGRTIEIEIPGLEQWIDKAAKQLKYQTIAHELEIFDLCPKCAAKHAIEPPLSVGTSPKDGPLTTPDDTG RRRSNK >Mature_165_residues STEQTATTRRVTRPRLLITQVLAELSRFATAQEITDILRERGTRIGTATAYRNVQMMASQGELDVIHVNGEALYRECSDQ HHHHHIVCHECGRTIEIEIPGLEQWIDKAAKQLKYQTIAHELEIFDLCPKCAAKHAIEPPLSVGTSPKDGPLTTPDDTGR RRSNK
Specific function: Required for the zinc-specific repression of two operons implicated in zinc uptake, yciC and ycdHIyceA. Also represses the expression of rpmE2, the gene for ribosomal protein L31B, which is expressed only after the end of exponential growth [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
None
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 18689; Mature: 18558
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEQTATTRRVTRPRLLITQVLAELSRFATAQEITDILRERGTRIGTATAYRNVQMMAS CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC QGELDVIHVNGEALYRECSDQHHHHHIVCHECGRTIEIEIPGLEQWIDKAAKQLKYQTIA CCCEEEEEECHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHH HELEIFDLCPKCAAKHAIEPPLSVGTSPKDGPLTTPDDTGRRRSNK HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STEQTATTRRVTRPRLLITQVLAELSRFATAQEITDILRERGTRIGTATAYRNVQMMAS CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC QGELDVIHVNGEALYRECSDQHHHHHIVCHECGRTIEIEIPGLEQWIDKAAKQLKYQTIA CCCEEEEEECHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHH HELEIFDLCPKCAAKHAIEPPLSVGTSPKDGPLTTPDDTGRRRSNK HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 9811636 [H]