Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

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The map label for this gene is 213692807

Identifier: 213692807

GI number: 213692807

Start: 2127387

End: 2127941

Strand: Direct

Name: 213692807

Synonym: Blon_1945

Alternate gene names: NA

Gene position: 2127387-2127941 (Clockwise)

Preceding gene: 213692806

Following gene: 213692812

Centisome position: 75.1

GC content: 57.48

Gene sequence:

>555_bases
ATGAGCGAACATGTGGAGCATGGGTTTGGGCCGGTGTGGGATGGCGAGTCGCGGGTGCTGATTCTGGGGTCGATGCCGAG
CCCGAAATCCCGAAAAGCGGCGTTTTACTATATGCATCCGCGGAACCGGTTTTGGCCGGTGTTGCAGGCGCTGTTTGCCA
ACTCCGCTGATCCTACTGACGCTGTCGGCGATTTACCTGAGTCCCGTCGTGCGTTTGCTCTGCGCCACCACATTGCGTTA
TGGGATGTCATTGCTTCTTGCGATATCACCGGAGCCAGCGATGCCAGCATCCGCAATGCCGCGCCCAACGACTTGGCACC
AATCTTGCGCGGCGCTCCAATCGCCCACATCTTCACAACCGGCGCGAAATCAGCGCAACTTTACCGCAAACTTATCGAGC
CGCGCCTGACCGAAGCCGGTATCGCCATCGGCATGACCCAACTGCCCTCCACCAGTCCGGCCAACGCCTCAATGCGTTTG
CCGGACCTTATCACCGCCTATCGCGAAGCTTTTCAAAAGGCAAACGTGCTAGAGAATGCGTATTGGAAAAACTAA

Upstream 100 bases:

>100_bases
CTGCTCGTCTTCGCCCGCCGTCAGCTCTTCTCGGAATTCGGCAAACAGTTCTCGGCCTGATTGCCTCGTGCGCTCAATCG
CCCGATTTAGGATGGAAACC

Downstream 100 bases:

>100_bases
GCATGGCGAAACCATCAATCTCGGACGGCAAACCCAGTATCACGAATCCTATCTTGCATTTCATTGGCAATAGCAATACA
GCGCGCCCGCGAAATACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Uracil-DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; T/U Mismatch-Specific DNA Glycosylase; Mug GT/U Mismatch-Specific DNA Glycosylase; GT/U Mismatch-Specific DNA Glycosylase-Like Protein; DNA Glycosylase; G/U Mismatch-Specific DNA Glycosylase; G/U Mismatch-Specific Uracil-DNA Glycosylase; G-T/U Mismatch-Specific DNA Glycosylase-Like; Uracil DNA Glycosylase Superfamily; YjeF-Like Protein; GT/U Mismatch-Specific Uracil/Thymine DNA-Glycosylase

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSEHVEHGFGPVWDGESRVLILGSMPSPKSRKAAFYYMHPRNRFWPVLQALFANSADPTDAVGDLPESRRAFALRHHIAL
WDVIASCDITGASDASIRNAAPNDLAPILRGAPIAHIFTTGAKSAQLYRKLIEPRLTEAGIAIGMTQLPSTSPANASMRL
PDLITAYREAFQKANVLENAYWKN

Sequences:

>Translated_184_residues
MSEHVEHGFGPVWDGESRVLILGSMPSPKSRKAAFYYMHPRNRFWPVLQALFANSADPTDAVGDLPESRRAFALRHHIAL
WDVIASCDITGASDASIRNAAPNDLAPILRGAPIAHIFTTGAKSAQLYRKLIEPRLTEAGIAIGMTQLPSTSPANASMRL
PDLITAYREAFQKANVLENAYWKN
>Mature_183_residues
SEHVEHGFGPVWDGESRVLILGSMPSPKSRKAAFYYMHPRNRFWPVLQALFANSADPTDAVGDLPESRRAFALRHHIALW
DVIASCDITGASDASIRNAAPNDLAPILRGAPIAHIFTTGAKSAQLYRKLIEPRLTEAGIAIGMTQLPSTSPANASMRLP
DLITAYREAFQKANVLENAYWKN

Specific function: Unknown

COG id: COG3663

COG function: function code L; G:T/U mismatch-specific DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20224; Mature: 20093

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHVEHGFGPVWDGESRVLILGSMPSPKSRKAAFYYMHPRNRFWPVLQALFANSADPTD
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCH
AVGDLPESRRAFALRHHIALWDVIASCDITGASDASIRNAAPNDLAPILRGAPIAHIFTT
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECC
GAKSAQLYRKLIEPRLTEAGIAIGMTQLPSTSPANASMRLPDLITAYREAFQKANVLENA
CCHHHHHHHHHHCCHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YWKN
CCCC
>Mature Secondary Structure 
SEHVEHGFGPVWDGESRVLILGSMPSPKSRKAAFYYMHPRNRFWPVLQALFANSADPTD
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCH
AVGDLPESRRAFALRHHIALWDVIASCDITGASDASIRNAAPNDLAPILRGAPIAHIFTT
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECC
GAKSAQLYRKLIEPRLTEAGIAIGMTQLPSTSPANASMRLPDLITAYREAFQKANVLENA
CCHHHHHHHHHHCCHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YWKN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA