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The map label for this gene is ykoC [H]

Identifier: 213692752

GI number: 213692752

Start: 2057122

End: 2057949

Strand: Reverse

Name: ykoC [H]

Synonym: Blon_1886

Alternate gene names: 213692752

Gene position: 2057949-2057122 (Counterclockwise)

Preceding gene: 213692753

Following gene: 213692751

Centisome position: 72.65

GC content: 62.44

Gene sequence:

>828_bases
ATGAGTGACGTGGTAATCGTCAGTCCGCAGGAAACGCGCGTGGAGCCGGTCAAAGCCTCATCGCCCTCATGGTTTATCGC
GCGCATCAACGCGGTCAGCCGCATCATCGGTGCGCTGTTGCTGTGTATTCCGATGTTCATCAGTCTGGATGTGGTATCCG
CGTCTACGGCGCTCGGCATCGAATTCGTGCTGCTGTGGATTGGTGGCGTGGCTCCGTGGACCGTATGCCGTAAGACCTGG
CCGGTATGGATCGCCGTCGCCGGCAGTTTTATCTCCGTGTTTCTCTACGGCCGCACCTCGGGCGAGATCCTGTGGCAGGG
CGGCTGGATTGTGATCAGCGAGGGATCCGTTAATCTGGCCATCGCCACGGCTATCAGGGTGGCGGCCATTGCCGTACCCG
GCGTGATTCTGGCCCTGGGCCTCGATCCCACTGATTTGGCGGACGGTTTGGTCGAGATTCTGCACTTCTCACCGCGATTC
GTATACGGCGGGTTGGCTGGATTGCGCATGTTTACGCTGCTGCAGGAAGATTGGCGCGCACTCGGCTTGTCCCAGCGTTC
GCGCGGCCTTGGCGACGGTAACGCCATCGCCCGTGCCCTCTCCCAAGCGTTCGGACTGCTGGTGCTCTCCATCCGGCGCG
CCACCAAACTTGCCACCGCCATGGAAGCGCGCGGCTTCGGCTCCGGCGCCCCACGCTCCCAAGCCCGCATCTCGCGTCTG
AAGCCTGTCGACTGGATCTTCTACGTCATCTGTCTGGCCGTCCCGCTGGCCTCCATAGGCGTAGCCGTCGGCACCGGGAA
TTGGCACTTCGCCTTTCAGGGTGCCTGA

Upstream 100 bases:

>100_bases
CCATCCGCGATCAAGGCTCGTGCGTGATCATGGTGACGCACGATGAGGCGCTGGTGGATGCGCTGGGCGCACGACGTGTG
ATGTTCGAGGAGGCGAAGGC

Downstream 100 bases:

>100_bases
AAGGCGGCAGACTGGCACAGTGCCTTTCAGGGTGCTTGAAAGGCTTACGATGCCTCCGCCAGCGGGGAGCGAGCCACGAC
TGACGTAATGCCCCGGCAGT

Product: cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSDVVIVSPQETRVEPVKASSPSWFIARINAVSRIIGALLLCIPMFISLDVVSASTALGIEFVLLWIGGVAPWTVCRKTW
PVWIAVAGSFISVFLYGRTSGEILWQGGWIVISEGSVNLAIATAIRVAAIAVPGVILALGLDPTDLADGLVEILHFSPRF
VYGGLAGLRMFTLLQEDWRALGLSQRSRGLGDGNAIARALSQAFGLLVLSIRRATKLATAMEARGFGSGAPRSQARISRL
KPVDWIFYVICLAVPLASIGVAVGTGNWHFAFQGA

Sequences:

>Translated_275_residues
MSDVVIVSPQETRVEPVKASSPSWFIARINAVSRIIGALLLCIPMFISLDVVSASTALGIEFVLLWIGGVAPWTVCRKTW
PVWIAVAGSFISVFLYGRTSGEILWQGGWIVISEGSVNLAIATAIRVAAIAVPGVILALGLDPTDLADGLVEILHFSPRF
VYGGLAGLRMFTLLQEDWRALGLSQRSRGLGDGNAIARALSQAFGLLVLSIRRATKLATAMEARGFGSGAPRSQARISRL
KPVDWIFYVICLAVPLASIGVAVGTGNWHFAFQGA
>Mature_274_residues
SDVVIVSPQETRVEPVKASSPSWFIARINAVSRIIGALLLCIPMFISLDVVSASTALGIEFVLLWIGGVAPWTVCRKTWP
VWIAVAGSFISVFLYGRTSGEILWQGGWIVISEGSVNLAIATAIRVAAIAVPGVILALGLDPTDLADGLVEILHFSPRFV
YGGLAGLRMFTLLQEDWRALGLSQRSRGLGDGNAIARALSQAFGLLVLSIRRATKLATAMEARGFGSGAPRSQARISRLK
PVDWIFYVICLAVPLASIGVAVGTGNWHFAFQGA

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 29331; Mature: 29200

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVVIVSPQETRVEPVKASSPSWFIARINAVSRIIGALLLCIPMFISLDVVSASTALGI
CCCEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFVLLWIGGVAPWTVCRKTWPVWIAVAGSFISVFLYGRTSGEILWQGGWIVISEGSVNLA
HHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHEEEEEECCCCCEEEECCEEEEECCCCEEH
IATAIRVAAIAVPGVILALGLDPTDLADGLVEILHFSPRFVYGGLAGLRMFTLLQEDWRA
HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LGLSQRSRGLGDGNAIARALSQAFGLLVLSIRRATKLATAMEARGFGSGAPRSQARISRL
HCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
KPVDWIFYVICLAVPLASIGVAVGTGNWHFAFQGA
CHHHHHHHHHHHHHHHHHHCEEEECCCEEEEEECC
>Mature Secondary Structure 
SDVVIVSPQETRVEPVKASSPSWFIARINAVSRIIGALLLCIPMFISLDVVSASTALGI
CCEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFVLLWIGGVAPWTVCRKTWPVWIAVAGSFISVFLYGRTSGEILWQGGWIVISEGSVNLA
HHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHEEEEEECCCCCEEEECCEEEEECCCCEEH
IATAIRVAAIAVPGVILALGLDPTDLADGLVEILHFSPRFVYGGLAGLRMFTLLQEDWRA
HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LGLSQRSRGLGDGNAIARALSQAFGLLVLSIRRATKLATAMEARGFGSGAPRSQARISRL
HCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
KPVDWIFYVICLAVPLASIGVAVGTGNWHFAFQGA
CHHHHHHHHHHHHHHHHHHCEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]