Click here to switch to the map view.

The map label for this gene is ysgA [H]

Identifier: 213692751

GI number: 213692751

Start: 2056131

End: 2057009

Strand: Reverse

Name: ysgA [H]

Synonym: Blon_1885

Alternate gene names: 213692751

Gene position: 2057009-2056131 (Counterclockwise)

Preceding gene: 213692752

Following gene: 213692750

Centisome position: 72.62

GC content: 62.68

Gene sequence:

>879_bases
ATGCCCATCAACGCCCAGATTCTTGATAATCCGAAATCCGACCGCGTGCGCCACATCGCCGATCTGACCCGCACCAAAGG
CCGCGAACGTTCGGGCCGTTTTCTTATCGAAGGCCCGCAATCCGTGCGCGAGGCCGTCACTTGGCGGCCGGACGTGGTGC
GGGACCTGTATGTAGAGGTTTCGCAGGCGCTGGAACATCCGCGTATCATCTCCTCCGCGTTGGAGAAGATCGTCGAAACC
TCGCAGGATGCCACGATTTATGTGCACTACTGCACCGGCGACGTGATGCACCGCATCAGTCCGGACGCCCAAGGCATCGC
GGCCGTCGGCAATGCCGAGTCCATGCACGCCGGTGCCGATGACGTCGAACTTGGCAAGAACGGTCGGGCCCCGCAGATTG
CCGTCTTCTGGCAGGTGCGCGACCCGGGCAACGCCGGCACCGTGATCCGTGCGGCCGATGCGGCCGGCTGTGACGCCGTA
CTCTTCGTGGACGACTGCGTGGACGTGCTGAACCCCAAGGTCATCCGCTCCACCGCAGGCTCCCTGTTCCATCTGCCGGT
ACTCGCCATGAGCACCGACGAATTCTTCACCTGGACAGGCGACCATAATTTGGACGTCTGGGCCGCCGACGTATACGGCA
CCGAAGAACGCAAGCCGGAAAGCCTGCCCGCAGTACTGGCGGACAAGGCGGCGGTCGAGGCTCCGAAAGCCGTGTTGTTC
GGCAATGAGGCGCGTGGCTTGGAACCGGACATCCTCACGCGCTGCGGCCGCATCGTCTCCATCCCGCTTTATGGCAAGGC
CGAATCGCTGAACCTCGGCACCTCGGCCGCGGTGATGCTGATGTCGCTGTCTATGTCGGGTCATGTTGAAAGAATGTGA

Upstream 100 bases:

>100_bases
TGGCACAGTGCCTTTCAGGGTGCTTGAAAGGCTTACGATGCCTCCGCCAGCGGGGAGCGAGCCACGACTGACGTAATGCC
CCGGCAGTAGGGTAGTGGCT

Downstream 100 bases:

>100_bases
AACCGGTAAAAACGCTGTGAAACGCTGAGAAAACATCAGACGAAAGGGTTCTCGTGGCAGAACAAATGGTGTTCGACGCC
GACCAGGTGACCGCTGAGGT

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MPINAQILDNPKSDRVRHIADLTRTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEVSQALEHPRIISSALEKIVET
SQDATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGADDVELGKNGRAPQIAVFWQVRDPGNAGTVIRAADAAGCDAV
LFVDDCVDVLNPKVIRSTAGSLFHLPVLAMSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF
GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVERM

Sequences:

>Translated_292_residues
MPINAQILDNPKSDRVRHIADLTRTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEVSQALEHPRIISSALEKIVET
SQDATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGADDVELGKNGRAPQIAVFWQVRDPGNAGTVIRAADAAGCDAV
LFVDDCVDVLNPKVIRSTAGSLFHLPVLAMSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF
GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVERM
>Mature_291_residues
PINAQILDNPKSDRVRHIADLTRTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEVSQALEHPRIISSALEKIVETS
QDATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGADDVELGKNGRAPQIAVFWQVRDPGNAGTVIRAADAAGCDAVL
FVDDCVDVLNPKVIRSTAGSLFHLPVLAMSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFG
NEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVERM

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 31655; Mature: 31524

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINAQILDNPKSDRVRHIADLTRTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEV
CCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHH
SQALEHPRIISSALEKIVETSQDATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGAD
HHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCC
DVELGKNGRAPQIAVFWQVRDPGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAG
CCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCHHHHHCCC
SLFHLPVLAMSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF
CEEEEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVERM
CCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PINAQILDNPKSDRVRHIADLTRTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEV
CCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHH
SQALEHPRIISSALEKIVETSQDATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGAD
HHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCC
DVELGKNGRAPQIAVFWQVRDPGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAG
CCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCHHHHHCCC
SLFHLPVLAMSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF
CEEEEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVERM
CCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]