Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 213692710

GI number: 213692710

Start: 2010669

End: 2011874

Strand: Direct

Name: ybbD [H]

Synonym: Blon_1843

Alternate gene names: 213692710

Gene position: 2010669-2011874 (Clockwise)

Preceding gene: 213692699

Following gene: 213692715

Centisome position: 70.98

GC content: 58.13

Gene sequence:

>1206_bases
GTGGCGACAATATGTGCTTTGGCAGTGGTGTTGGCCGGCGTGGCAGCCTACGAATGGCATGTCGGATGGTTCGCCAAATC
CACATCAGACGGCAACACCGCCGCTCCCCAGACCTCCCGGACAAGTGTGTTACCACGCACCGACGCTCCTTCCCCGAAGA
AGAACGACGCCCCGGCCGCACAAGCCCAACGTGCGGTATCCGCCATGACACTTGAGGAACGTGTGGGACAGTTAGTGATG
GTGCCGTTGTTCGCCGGTTCCGATCCCTCCTCGTTGGCTTCAACAATCGCCGACGAGCACATTGGCTCGGCCATTCTCAT
TGGCAATTGGAATACCGGCGTCGATACGGTCAAGACCGCGACCGCGCAACTCCAAGGATATGCGCCGGCCGGCAATCGTC
TCATCATCGCCACCGATCAGGAGGGTGGTCAGGTACAGCATCTGACTGGTACCGGTTTCGACACAATGCCCAGTGCCGTT
GAGCAGGGCACAATGTCCGCTGACGCATTGCGTCAATCGGCAGGCACGTGGGGTTCGCAATTAGCTGCTGCTGGCATAAA
TGTCGATTTGGCACCGGTGCTCGGCACGGTGGTGGGCGATCGTGCCTCGAATGCTCCGATTGGCGCGCTGGATCGTGATT
TCGGATTGGATGCGGCCGGTAACGCCGAGCATGGCATCGCCGTTATTGAGGGTTTGCGAGGCGCTCAGGTCGGTGCGGCG
GTCAAACATTATCCTGGGTTGGGCGCGGTAAGCGGCAATACCGACTTCACCACCGAAGGCATTCTGGATACGACCACCAC
GTTGGACGGGGCCGAGGCAGGTGCCTTTGACCAGGCGATCACCAAGGCCGATCCTGCAATGGTGATGATGTCGTTGGCCA
CGTATCAATCCATCGATCCGAATAATCCGGCGGTGTTTTCTTCTACGATTATCGACGGCCATATTCGCAACGCCCTGAAA
TATACGGGCGTGGTGATTTCGGATTCGATATCTGCCGAAGCGTTAAGCAGCTACGATGTAAGCCAATTGGGAGTAAAGCT
CGTCGAGGCGGGCGGCGACATGTCCTGCATCGGTCAGACGGATTACGTAAAGCCAGTTGTGGACGGCCTCAACGAACGGG
CGAAGTCCGATCCGGCTTTCGCTTCGAAAGTGACGGCGGCGGCGACTCGCGTAATGACATTGAAAATCAAGATGGGACTG
GCCTGA

Upstream 100 bases:

>100_bases
GATCTGTTCTACGCTTGCCGGTATGAACAGACAACGGCCACATCATATGCGTCCCTCAGTACACGCCATACGCCAACTTC
GGCACAGGAGCACTCCAATC

Downstream 100 bases:

>100_bases
CCGTTCATCCCTGTACTGGCGAGGATTCATGCGCGCTGATTCGCGCTAATCCTCACCAGCCCTCGTACGAATGCACACTA
GTCCTCGTACGAATCGTCAG

Product: glycoside hydrolase, family 3 domain protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MATICALAVVLAGVAAYEWHVGWFAKSTSDGNTAAPQTSRTSVLPRTDAPSPKKNDAPAAQAQRAVSAMTLEERVGQLVM
VPLFAGSDPSSLASTIADEHIGSAILIGNWNTGVDTVKTATAQLQGYAPAGNRLIIATDQEGGQVQHLTGTGFDTMPSAV
EQGTMSADALRQSAGTWGSQLAAAGINVDLAPVLGTVVGDRASNAPIGALDRDFGLDAAGNAEHGIAVIEGLRGAQVGAA
VKHYPGLGAVSGNTDFTTEGILDTTTTLDGAEAGAFDQAITKADPAMVMMSLATYQSIDPNNPAVFSSTIIDGHIRNALK
YTGVVISDSISAEALSSYDVSQLGVKLVEAGGDMSCIGQTDYVKPVVDGLNERAKSDPAFASKVTAAATRVMTLKIKMGL
A

Sequences:

>Translated_401_residues
MATICALAVVLAGVAAYEWHVGWFAKSTSDGNTAAPQTSRTSVLPRTDAPSPKKNDAPAAQAQRAVSAMTLEERVGQLVM
VPLFAGSDPSSLASTIADEHIGSAILIGNWNTGVDTVKTATAQLQGYAPAGNRLIIATDQEGGQVQHLTGTGFDTMPSAV
EQGTMSADALRQSAGTWGSQLAAAGINVDLAPVLGTVVGDRASNAPIGALDRDFGLDAAGNAEHGIAVIEGLRGAQVGAA
VKHYPGLGAVSGNTDFTTEGILDTTTTLDGAEAGAFDQAITKADPAMVMMSLATYQSIDPNNPAVFSSTIIDGHIRNALK
YTGVVISDSISAEALSSYDVSQLGVKLVEAGGDMSCIGQTDYVKPVVDGLNERAKSDPAFASKVTAAATRVMTLKIKMGL
A
>Mature_400_residues
ATICALAVVLAGVAAYEWHVGWFAKSTSDGNTAAPQTSRTSVLPRTDAPSPKKNDAPAAQAQRAVSAMTLEERVGQLVMV
PLFAGSDPSSLASTIADEHIGSAILIGNWNTGVDTVKTATAQLQGYAPAGNRLIIATDQEGGQVQHLTGTGFDTMPSAVE
QGTMSADALRQSAGTWGSQLAAAGINVDLAPVLGTVVGDRASNAPIGALDRDFGLDAAGNAEHGIAVIEGLRGAQVGAAV
KHYPGLGAVSGNTDFTTEGILDTTTTLDGAEAGAFDQAITKADPAMVMMSLATYQSIDPNNPAVFSSTIIDGHIRNALKY
TGVVISDSISAEALSSYDVSQLGVKLVEAGGDMSCIGQTDYVKPVVDGLNERAKSDPAFASKVTAAATRVMTLKIKMGLA

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=239, Percent_Identity=30.1255230125523, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 40990; Mature: 40859

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATICALAVVLAGVAAYEWHVGWFAKSTSDGNTAAPQTSRTSVLPRTDAPSPKKNDAPAA
CHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHH
QAQRAVSAMTLEERVGQLVMVPLFAGSDPSSLASTIADEHIGSAILIGNWNTGVDTVKTA
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
TAQLQGYAPAGNRLIIATDQEGGQVQHLTGTGFDTMPSAVEQGTMSADALRQSAGTWGSQ
HHHHEECCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCHHH
LAAAGINVDLAPVLGTVVGDRASNAPIGALDRDFGLDAAGNAEHGIAVIEGLRGAQVGAA
HHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHH
VKHYPGLGAVSGNTDFTTEGILDTTTTLDGAEAGAFDQAITKADPAMVMMSLATYQSIDP
HHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCC
NNPAVFSSTIIDGHIRNALKYTGVVISDSISAEALSSYDVSQLGVKLVEAGGDMSCIGQT
CCCCEEEEHHHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHHHHHHEECCCCEEECCCC
DYVKPVVDGLNERAKSDPAFASKVTAAATRVMTLKIKMGLA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEEEEECCC
>Mature Secondary Structure 
ATICALAVVLAGVAAYEWHVGWFAKSTSDGNTAAPQTSRTSVLPRTDAPSPKKNDAPAA
HHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHH
QAQRAVSAMTLEERVGQLVMVPLFAGSDPSSLASTIADEHIGSAILIGNWNTGVDTVKTA
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
TAQLQGYAPAGNRLIIATDQEGGQVQHLTGTGFDTMPSAVEQGTMSADALRQSAGTWGSQ
HHHHEECCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCHHH
LAAAGINVDLAPVLGTVVGDRASNAPIGALDRDFGLDAAGNAEHGIAVIEGLRGAQVGAA
HHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHH
VKHYPGLGAVSGNTDFTTEGILDTTTTLDGAEAGAFDQAITKADPAMVMMSLATYQSIDP
HHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCC
NNPAVFSSTIIDGHIRNALKYTGVVISDSISAEALSSYDVSQLGVKLVEAGGDMSCIGQT
CCCCEEEEHHHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHHHHHHEECCCCEEECCCC
DYVKPVVDGLNERAKSDPAFASKVTAAATRVMTLKIKMGLA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]