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The map label for this gene is ydeB [H]

Identifier: 213692627

GI number: 213692627

Start: 1933631

End: 1934224

Strand: Reverse

Name: ydeB [H]

Synonym: Blon_1760

Alternate gene names: 213692627

Gene position: 1934224-1933631 (Counterclockwise)

Preceding gene: 213692632

Following gene: 213692626

Centisome position: 68.28

GC content: 59.26

Gene sequence:

>594_bases
ATGTCTTACAAAGTCGGCGATATGGTCGTCTATCCGCGTCATGGTGCAGCGAAGGTGGAGGCCATTACCGAGCGGACGGT
CAAGGGAGTGACGCGCGAATATCTGCAGTTGTCCGTACTCTCTTCCGATGGTTTGGTCATCAACGTTCCCGTGGACAATG
CCAAGAAGGTCGGCGTGCGTGACATCGTCTCCGCATCCGAAGTGGCCAAGGTGTTCGGCATCCTGCGGACCCCGATCATC
GAGAAAGAGATGAACTGGTCTCGCCGTTACAAGCTGAACGTCGAAAAGATCGCCACCGGCGATGTCAACAAGATCGCCGA
AGTGGTTCGCGATCTCGCCCAGCGCGATGTCGACGAGCACGGCCTGTCCGCGGGCGAGAAGCGTATGCTCACCAAGGCCC
GCGCCATTCTGACTTCTGAGATCGCCTTGTCCGAGAAGATCGACGAGGCGGAAGCCCAGCGTCTGCTCGACGTGAACCTG
GGCTACGAGCCCGCTCAGCCCGGTGACGACAAGCATCACACCGCCGAGCCCGAAGAGGCCGCGGCCGATACTTTGGCTCG
TGTCGAAGCCGAGAAGAAGTCCAAGAAGAAGTGA

Upstream 100 bases:

>100_bases
TGTGTCTTCGTGGTTGTGAGCGCTCTCATAGGGGCGGTCCAGACCGCATGGCATAATTATTCGAGTTTTTGTGTGTAAGC
CGTCAGTTCTCGGAGGGTAC

Downstream 100 bases:

>100_bases
TTTGATTGTTTTGAGGCCTCGGTCGTGTCCTTATGCGATGCGCCGGGGCTTCGTGATTCATAATCGTTTGCTGCCGTTCA
TCTGGGCAATGCCATCGAAG

Product: transcriptional regulator, CarD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDIVSASEVAKVFGILRTPII
EKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNL
GYEPAQPGDDKHHTAEPEEAAADTLARVEAEKKSKKK

Sequences:

>Translated_197_residues
MSYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDIVSASEVAKVFGILRTPII
EKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNL
GYEPAQPGDDKHHTAEPEEAAADTLARVEAEKKSKKK
>Mature_196_residues
SYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDIVSASEVAKVFGILRTPIIE
KEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLG
YEPAQPGDDKHHTAEPEEAAADTLARVEAEKKSKKK

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21747; Mature: 21616

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVR
CCEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHCCHH
DIVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH
HHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHCCHHHH
GLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
AADTLARVEAEKKSKKK
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYKVGDMVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVR
CEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHCCHH
DIVSASEVAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEH
HHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHCCHHHH
GLSAGEKRMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
AADTLARVEAEKKSKKK
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]