| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692344
Identifier: 213692344
GI number: 213692344
Start: 1633622
End: 1634110
Strand: Reverse
Name: 213692344
Synonym: Blon_1470
Alternate gene names: NA
Gene position: 1634110-1633622 (Counterclockwise)
Preceding gene: 213692346
Following gene: 213692341
Centisome position: 57.69
GC content: 46.83
Gene sequence:
>489_bases ATGACAGCAGAAGTGGATGACGGTTTCTTTCAATTGTTTGAACGCAGGATTTTTGTGCGTGGAGAAGCTTATTACGATGC CGGCAAGGTTGATCCGCCGGTCATGATTGCTGAGAATCTTTGGCATACCGTGGTTCGCGGGAATGACGACTATCAAGTGG ACATTCGTTTGCGCCATGGCAAAGTGATTTCTGCCGCCTGCACATGCCAATATTCCCAACGTGCAACGTACTGCAAGCAT GTGGCTGCGGTGCTTATCTTCATGCGTGAGAGCCGACGTCGGGAATTAGATGAATCGCAAGACCAAGTTTCAGAGTTTCC TCATGAAGCATTGAATTGTGTGAGATGGTATACGATGCATGAATTCCCGAAATATCGCGGATTGACAGAGGGAGATTGGC ATGCTGTCAAGCGAATATTTGAGGTGTTGTACTGTATCCCCGACCTTGATATTACATATACACATGAGGTAATGGATACC GTTTGGTGA
Upstream 100 bases:
>100_bases TTGGTTCCGGGCGATGCTCGCAGCAATTGAAAATATCGCATGACATGACAAAAAGCGGGCGACAAGCGTTATCCTGAAAT ACATAGGGCAAGGAGGCCGT
Downstream 100 bases:
>100_bases CATCCATCTCGTAGGTAAACAGTTCGCTGTGGCCAAGACGCTGAGTCTCAGGGATATTCTCGTCCGCACCGAGTCCCACT GCAATCACACGCCAACCCCG
Product: zinc finger, SWIM domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MTAEVDDGFFQLFERRIFVRGEAYYDAGKVDPPVMIAENLWHTVVRGNDDYQVDIRLRHGKVISAACTCQYSQRATYCKH VAAVLIFMRESRRRELDESQDQVSEFPHEALNCVRWYTMHEFPKYRGLTEGDWHAVKRIFEVLYCIPDLDITYTHEVMDT VW
Sequences:
>Translated_162_residues MTAEVDDGFFQLFERRIFVRGEAYYDAGKVDPPVMIAENLWHTVVRGNDDYQVDIRLRHGKVISAACTCQYSQRATYCKH VAAVLIFMRESRRRELDESQDQVSEFPHEALNCVRWYTMHEFPKYRGLTEGDWHAVKRIFEVLYCIPDLDITYTHEVMDT VW >Mature_161_residues TAEVDDGFFQLFERRIFVRGEAYYDAGKVDPPVMIAENLWHTVVRGNDDYQVDIRLRHGKVISAACTCQYSQRATYCKHV AAVLIFMRESRRRELDESQDQVSEFPHEALNCVRWYTMHEFPKYRGLTEGDWHAVKRIFEVLYCIPDLDITYTHEVMDTV W
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19176; Mature: 19045
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS50966 ZF_SWIM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAEVDDGFFQLFERRIFVRGEAYYDAGKVDPPVMIAENLWHTVVRGNDDYQVDIRLRHG CCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECC KVISAACTCQYSQRATYCKHVAAVLIFMRESRRRELDESQDQVSEFPHEALNCVRWYTMH EEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHH EFPKYRGLTEGDWHAVKRIFEVLYCIPDLDITYTHEVMDTVW HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCC >Mature Secondary Structure TAEVDDGFFQLFERRIFVRGEAYYDAGKVDPPVMIAENLWHTVVRGNDDYQVDIRLRHG CCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECC KVISAACTCQYSQRATYCKHVAAVLIFMRESRRRELDESQDQVSEFPHEALNCVRWYTMH EEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHH EFPKYRGLTEGDWHAVKRIFEVLYCIPDLDITYTHEVMDTVW HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA